Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1204 ATGAAGATTCAGTGCAACGTGTGCGAGACCGCGGAGGCGAAGGTTCTGTGCTGCGCCGACGAGGCGGCGCTGTGCTGGGAATGCGACGAGAAGGTTCACGCCGCAAACAAGCTCGCCACCAAGCACCAGAGAGTTCTTCTCTCTCTCTCTCCCTCTCACGTCCCCAAGTGTGACATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTGGAGGATCGAGCTTTGCTATGTAGGAATTGTGATGTATCTATACACACATTAAATGCCCGTGTCTCTGGCCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACCGAGTGCGGTGCTTCCTCATCTTCTTTGAAGTCACAGTCTCACGAGAAAATGTCAGATGCTAAATCTTCATCCATCTCCAAAAATGTTTCCTCACTGCCCCAACCATCAAATGTTGTCAATGAAGTGTTACCCCTCCAAAATATGCAAGGAGCTGAGGAGTTTCCACCAAACAATTTCTCGGGTTATACTTCTGGAAACGTCTCGCAATGGCCCATTGAAGAATTTCTCGGATTAAATGAATTCAATCAGTATTATAATTACATGGATGGATCATCTAAGGCTGACAGTGGTAAACTTGGGGATTCTGATTCTTCTGTTTTGAGGTCTAGTGAAGAGGAAATGGATGATGACGGCTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCCCCTCCTACGGCTTCAGGTCTATATTGGCCCAAAGTCCCCCAATATACATCTAACAATGCCATGTCTGTTCCTGACATATGCTTTTCTCATGGGCAACAGCCCCGCCATGCCCAGCATAACTCCACTCTTTCAAAACGGCGTAGGCAACTATAA 885 0.4712 MKIQCNVCETAEAKVLCCADEAALCWECDEKVHAANKLATKHQRVLLSLSPSHVPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTLNARVSGHQRFLLTGVRVGLEATECGASSSSLKSQSHEKMSDAKSSSISKNVSSLPQPSNVVNEVLPLQNMQGAEEFPPNNFSGYTSGNVSQWPIEEFLGLNEFNQYYNYMDGSSKADSGKLGDSDSSVLRSSEEEMDDDGFLGRVPDSSWTVPQIPSPPTASGLYWPKVPQYTSNNAMSVPDICFSHGQQPRHAQHNSTLSKRRRQL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1204 294 Gene3D Classic Zinc Finger 1 92 - -
Aed4g1204 294 MobiDBLite consensus disorder prediction 201 239 - -
Aed4g1204 294 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 293 - -
Aed4g1204 294 CDD Bbox1_BBX-like 5 47 - -
Aed4g1204 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 293 - -
Aed4g1204 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Aed4g1204 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed4g1204 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed4g1204 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Aed4g1204 294 MobiDBLite consensus disorder prediction 214 229 - -
Aed4g1204 294 MobiDBLite consensus disorder prediction 115 142 - -
Aed4g1204 294 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Aed4g1204 294 MobiDBLite consensus disorder prediction 271 294 - -
Aed4g1204 294 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1204 Aed-Chr4 11867363 11872166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1204 1 294 C2C2-CO-like Transcription Factor Family AT1G78600 46.726 1.45e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed4g1204 zf-B_box 3.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1204 4 11867363 11872166 Aed4g1204 4 11867363 11872166 ECH