Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0689 ATGGCTGATCAAAACAACAGAGGCAGAGAAACACAAAGAAGATTTGCCGTTCTTGGCATATCTTCAATCCTCCTTGTGGCCATGGTGGCTGCGGTGGCGGTTTCTTTAAGCAATGGAGGCGATACCGACGAAGACGGGACTAGTCTCCATAGTTCTCAAAGGAACAAAGTAGACATGATTTGCAGTTCAACAGAATACATGGAAACATGCAAGAAAAGCCTTGGAGCAGCATCCAACGAAACCACAGACACAAAGGATCTAATCAAGGCTGCACTCAATGCCACAGCAGTGGAACTCATAAACCACATAAAGAACACAACCCTCTATCATGAGTTGGCCAAGGACAACATGACAAAACAAGCAATGGACATTTGCAATGAAGTGTTTGACTATGCTGTTGATGGCATTCACAAATCATCAAAGACAATGGACAAGTTTGATTACACCCAGTTGAGTGAATATGTCTATGACCTCAAGGTTTGGTTGACAGGGACACTCTCTCACCAACACACATGCTTGGATGGTTTTGAGAACACAAACACAAAAGCTGGTGAGACAATGGCAAAGGTGATGAACACTTCTTTGGAGCTTAGTACCAATGCATTAGACATGATCAATTTCATCTCTCTCATGATCCAGGATCTTAACATGAGCACAGTTGGTAGTATTAGTAGTAATATTAATAGGAGACTTCTCTCTGATGAGGAAGATCAAAGTCAAAGTACTCATAGACTTAAAAATGGTTACCCTTCATGGGTGAATGAAGGGCAAAGACGTCTTCTTGAGGTTGGTGGAGCAGTTAATGCAACTGTGGCACAAGATGGATCTGGACAATTTAAATCACTCACTGATGCTCTTAAGACTGTTAAACCTGGAAATGCTGAAACTTTTGTGATCCATGTTAAGGCTGGTGTGTACAAAGAAATTGTGGAAGTGGGCAAGGACATGACCCATGTCACAGTTATTGGAGATGGTCCTACAAAGACTATTTTCACTGGCAGTTTGAACTACGTTGATGGTGTCCAAACTTACAAAACTGCTACCTTTGCTGTTAATGCTGCAAACTTCATGGCCAAGGATGTTGGATTTCAAAACACAGCAGGTGCTGAGAAACACCAAGCAGTGGCACTTCGAGTAACAGCAGACCAAGCTGTGTTTTTCAATTGCCAAATGGATGGATTCCAAGACACCCTCTATGTCCAATCTCAACGCCAATTCTACCGTGACTGCAGCATCAGTGGCACCATTGACTTCATCTTCGGAGATGCATTTGGAGTGTTCCAAAACTGCAAACTAATTGTAAGAAAGCCCTTGTCGAATCAACAGTGCATGGTGACAGCTGGTGGCAGAACCAAAGCTGATAGTTCTAGTGCCCTAGTGTTCCAAAAATGCCACTTCACTGGGGAACCCCAAATGAATAGCTTGAACCCCAGGGTAGCATACCTTGGAAGGCCATGGAAGCCATACTCTAAGGTTGTGATCATGGAATCTCAAATTGACAACATCTATGTACCAGAAGGGTACATGGCATGGATGGGAACTGAGTTCCTGGACACGTGCGTGTATTATGAGTATAATAACAAGGGTCCTGGTGCTGTCACATCCCTAAGAGTTAAATGGCCTGGTGTTAAGTCCATAGGATTTGCTGAAGCAACTGATTATTTTCCTGGGAGGTTCTTTGAAGTTGTTAATTCAGCTGAACGTGATGCTTGGATTGTTAATGCTAGTATACCTTACACTCTTGGCTCTATGAATTAA 1758 0.4295 MADQNNRGRETQRRFAVLGISSILLVAMVAAVAVSLSNGGDTDEDGTSLHSSQRNKVDMICSSTEYMETCKKSLGAASNETTDTKDLIKAALNATAVELINHIKNTTLYHELAKDNMTKQAMDICNEVFDYAVDGIHKSSKTMDKFDYTQLSEYVYDLKVWLTGTLSHQHTCLDGFENTNTKAGETMAKVMNTSLELSTNALDMINFISLMIQDLNMSTVGSISSNINRRLLSDEEDQSQSTHRLKNGYPSWVNEGQRRLLEVGGAVNATVAQDGSGQFKSLTDALKTVKPGNAETFVIHVKAGVYKEIVEVGKDMTHVTVIGDGPTKTIFTGSLNYVDGVQTYKTATFAVNAANFMAKDVGFQNTAGAEKHQAVALRVTADQAVFFNCQMDGFQDTLYVQSQRQFYRDCSISGTIDFIFGDAFGVFQNCKLIVRKPLSNQQCMVTAGGRTKADSSSALVFQKCHFTGEPQMNSLNPRVAYLGRPWKPYSKVVIMESQIDNIYVPEGYMAWMGTEFLDTCVYYEYNNKGPGAVTSLRVKWPGVKSIGFAEATDYFPGRFFEVVNSAERDAWIVNASIPYTLGSMN 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0689 585 SUPERFAMILY Pectin lyase-like 266 560 IPR011050 -
Aed4g0689 585 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Aed4g0689 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 208 IPR035513 -
Aed4g0689 585 Pfam Pectinesterase 268 559 IPR000070 GO:0030599|GO:0042545
Aed4g0689 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 206 IPR006501 GO:0004857
Aed4g0689 585 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Aed4g0689 585 SMART PMEI_2 52 204 IPR006501 GO:0004857
Aed4g0689 585 CDD PMEI-like_3 60 206 - -
Aed4g0689 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Aed4g0689 585 Pfam Plant invertase/pectin methylesterase inhibitor 57 204 IPR006501 GO:0004857
Aed4g0689 585 Gene3D - 266 584 IPR012334 -
Aed4g0689 585 PANTHER PECTINESTERASE 9 583 - -
Aed4g0689 585 PANTHER PECTINESTERASE 9 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0689 Aed-Chr4 5808443 5811061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0689 8 579 Carbohydrate Esterase AT5G49180 44.750 7.74e-176 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0689 K01051 - gmx:100784682 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0689 4 5808443 5811061 Aed4g0689 4 5808443 5811061 ECH