Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0565 ATGTCAAGCTTTAAGAACTTGTTGAATTTTGAGGGTGGTGCTGATGTTTGCAGCAGCATAAAGAAAACAGAACCGGAAACACCTAGTGAATGTGGAGAAAACTCTGAGCAACAAGAAAATTCTTCTAATTCAAGGGATAGTAAACAAGACTCCCAACATAAAGTGCAGAAGCCTGTGGAGGATAACATGGAGACCGGTAGCTCGGATCAAGATAAAGTCTTGAAGAAACCTGACAAGATTGTTCAGTGTCCGCGATGCAACAGTTTGGACACCAAGTTTTGCTATTTCAACAACTACAATGTCAATCAACCTCGGCACTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCAATAGGTGCTGGGAGACGGAAGAACAAGCACCTAGCCTCTCAATACCGACACATTATAGTAACCTCGGATGGAATTCCACCCTCCAGGCTTGAAACCATGGACTCGTCGGGTCTCCAACAGCAGCAGCATATTGCAAGTCTTGAATCCTCGGCTCCTTTCAGGCCTTCAGCGGATAATGGTGGCACCGTGTTGAAGTTTGGTCCGGACACCCCTCTCTGCGAATCGATGGATTCAATGCTTAATCTTAGAGAACAGAGAAGATGTGTTGATGCAAGTTCTGTCAGCTGCGTAGAGTATAGAGGGGAACCATCCTTGTGTGCATCTTCTGTCACAACTAATGGTGTTCAAGGAAATGAACTATCAGAACATAATAACACATCAAATTGGTTGCAATGTTACCCTGTTCCTCCATGGGTGTTACCTTATCAAGGTTGGAATAATAATGTGAATTCCATGGATGCGGTTCATCGTTCTTCGGTACCACCAATGTGTAATCCATATAACACAGCTGGTCCTGCAGCAATGCAATGGTGTCCCACGCCAATGGTTGCGATTCCCGGCATGTGTCCACCAAGCATTCCTTTGCAATTTGTACCACCACCATCATACTGGAGCGGAATGCCACTTTGGAATGCTGGAACCGGGGCAGTGTCGATAGGATCCAATGCTTGCCTTTCACCATCTTCCTCCACTAGTAACAGTTGCTGCTCAGGCAATGGCTCCCCGAAGCTCGGAAAGCACACTAGAGACACGGTTTGCACTGACGAAGAGAAATCGGAGAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTGATGCTCCAAACGAGGCCTCAAAAAGTCCTATAAGGGCTACATTATCTATAGCTATCAAGCCTGATAAGCTGCAATCTGTATCAAACTGTGATGTTTCGAAAAAAAGTGAACCAAAAGAAGGCAAAGATCGTGTATTAGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATCTCTCGTGCTCATGCATTTCAGGAGAGCTTATAG 1398 0.4521 MSSFKNLLNFEGGADVCSSIKKTEPETPSECGENSEQQENSSNSRDSKQDSQHKVQKPVEDNMETGSSDQDKVLKKPDKIVQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSDGIPPSRLETMDSSGLQQQQHIASLESSAPFRPSADNGGTVLKFGPDTPLCESMDSMLNLREQRRCVDASSVSCVEYRGEPSLCASSVTTNGVQGNELSEHNNTSNWLQCYPVPPWVLPYQGWNNNVNSMDAVHRSSVPPMCNPYNTAGPAAMQWCPTPMVAIPGMCPPSIPLQFVPPPSYWSGMPLWNAGTGAVSIGSNACLSPSSSTSNSCCSGNGSPKLGKHTRDTVCTDEEKSEKCVLVPKTIRIDAPNEASKSPIRATLSIAIKPDKLQSVSNCDVSKKSEPKEGKDRVLGASQILEANPAAISRAHAFQESL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0565 465 MobiDBLite consensus disorder prediction 46 73 - -
Aed4g0565 465 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Aed4g0565 465 MobiDBLite consensus disorder prediction 22 45 - -
Aed4g0565 465 MobiDBLite consensus disorder prediction 19 73 - -
Aed4g0565 465 Pfam Dof domain, zinc finger 78 135 IPR003851 GO:0003677|GO:0006355
Aed4g0565 465 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
Aed4g0565 465 PANTHER CYCLIC DOF FACTOR 3-LIKE 15 464 - -
Aed4g0565 465 PANTHER CYCLIC DOF FACTOR 2 15 464 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0565 Aed-Chr4 4721296 4723661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0565 26 464 C2C2-Dof Transcription Factor Family AT5G39660 37.093 9.57e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed4g0565 zf-Dof 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0565 - - gmx:100813787 756.518