Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0231 ATGTCGAATAGCCAAAATCCGAAACACGATGGTAGTAGCTCATCATTTCTCATTGACATAACCACCACTGTTAATTACACCATCAATACAGCCAAAAAAAGATGGCGTTTTGCTTACACAGCGATTTATTCTAGAAGGGTCATGCTTGCCCTGGCCAAAGAAGTCATATCTAAGAGAACCACAAACACTCATCCTTACTCTAAACTTTTCCAAACTCAATCTTCCAGTTCCGGAAGCACTCTTGATATCATTCAGCCACTAATTCCCCAACATCAACATGGAACCAATCATTATTCTTTGGTTCATGATGTTGACAAGGCCAGACTTGCTAGCGTGGTAAAGGACAAAAATTTGGAAGCCTATGCTGAGTTTGGAGGAGTTAAAGGTGTTGCAAATATTCTTGGAACCATTCCAGGAAAGGGAATCAGTGGCAACGATGATGATGTTGCGAAACGACGTGAATTGTTTGGTTCAAACACATACCAGAGGCCACCACCCAAGGTATTTCTAAGCTTTGTATTGGAAGCTTTCAATGACACAACTATTTTGATCCTTCTTGTTTGTGCTGGCCTTTCCCTTGGTTTTGGAATAAAAGAACATGGGCCAGGGGAAGGGTGGTATGAAGGAGGGAGTATATTTGTAGCAGTGTTTCTTGTAGTGGCTGTCACTGCACTCAGCAACTTCAGACAAGAGAGACAATTTGAAAAATTGTCTAAGATAAGCAACAACATTAAAGTTGAAGTTGTGAGAAATGGAAGGCCACAGCAGATATCCATCTTTGATGTACTTGTTGGAGATATTGCGTCACTTAAAATTGGTGATCAAATTCCAGCTGATGGATTGTTCTTGAGTGGCCATTCTTTGCAAGTGGATGAATCAAGTATGACAGGTGAGAGCGACCATGTAGAAATTGAGCCTTCAAATAGCCCTTTTTTGTTGTCTGGTGCAAAAGTGGTGGATGGCTTTGCTCAGATGCTTGTGACATCTGTGGGAACCAACACGGCATGGGGTGAAATGATGAGCTCAATATCACAAGACACCAAGGAAAGAACACCATTGCAGGCTCGCCTTGACAAGTTAACCTCTTCTATTGGAAAGGTAGGCCTTGCAGTTGCTTTTCTTGTTCTCGTAGTCTTGTTAATTCGTTATTTCACTGGAAACACCCAAGATGACAAAGGGAATCAGGAGTTCCAGGGGAGTAAAACTGATGTAAACGATGTTTTCAACACGGTTGTGCAAATTGTTGCTGTTGCTGTCACCATTGTGGTTGTGGCAATCCCTGAGGGCCTGCCATTGGCTGTCACTCTCACACTTGCTTACTCCATGAAAAGAATGATGGCAGACCAAGCAATGGTGAGGAAACTTTCTGCTTGTGAAACAATGGGGTCAGCAACAGTTATTTGCACAGATAAAACTGGCACCTTAACTTTGAATCAAATGAGAGTCACCAAGTTTGGGCTTGGCCTAGAAAATGTTACGGAAAACTTTTCCAATGCAATGGCTCCTAATGTTCTTGAGTTATTTCACCAAGGAGTTGGCCTCAACACAACTGGCAATATCTATAAACCTTCATCAGAATCTGAACCTGAAATTTCTGGTAGCCCAACAGAGAAAGCTATTCTCTTGTGGGCTGTGTCAGATTTACACATGGACATGGATGAACTGAAGTGCACACATGAAGTTCTCCATGTTGAAACGTTTAACTCGGAGAAGAAACGAAGTGGTGTCGCAATAAGGAAAAAGACCAACAACACAATTCACGTGCATTGGAAAGGTGCTGCAGAGATTATACTTGCAATGTGTTCTAATTACATTGACAATAATGGCATAGAGAAGCCCCTTGATGAAGAACGGAGTAAACTAGAGAAGATAATTCAAGGCATGGCTGCTAGTAGCCTTAGATGTATTGCTTTTGCTTACATGCAGATTTCCGAAGACATTGATTGTAACGATAAGGAGAAAGCACAACAAATCCTTAGAAAAGATGGCTTGACCTTGCTAGGTATTGTTGGCATCAAGGATCCATGCCGACCCGATGTCAAGAAGGCTGTGGAAGCTTGTAAACTTGCAGGTGTTCGTATCAAGATGATCACTGGAGATAACATTTTCACTGCAAAAGCCATAGCAACAGAATGTGGAATATTAGACCTTGATGACCATGAAAATGCAGAAGTGGTGGAAGCTCTAGTGATCAATTTTATTGCAGCAGTTTCTTCGGGAGATGTTCCTCTAACAACAGTTCAACTACTATGGGTAAATCTCATTATGGATACTCTAGGAGCATTGGCACTGGCTACAGAAAGGCCTACAAAGGAGTTAATGGAGAAACAACCAGTTGGTAGAACTGAGCCTCTTATTACTAGGATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAGATTGTTGTTCTCTTGGTTTTACAATTCAAGGGAAAGTCAATCTTCAATGTCAATGCGAAGGTAAAGGATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAATTCAATGCTAGAAGTATGGAGAAAGTTAATGTATTCCAAGGCATTCACAAAAACCACTTGTTTCTTGGAATTGTGGGGATTACAATTGTTCTTCAAGTTGTGATGGTGGAACTCCTAAAGAAGTTTGCTGATACGGAGAGGTTAACATGGGAACAATGGGGAATTTGTATTGGAATTGCAGCTATGTCATGGCCAATTGCTTGGGTTACAAAGCTCATACGCGTTAAGTGGGTAAAATTATTGGTCTTCAAGGTTAAGCATTTGTTTTAA 2787 0.4094 MSNSQNPKHDGSSSSFLIDITTTVNYTINTAKKRWRFAYTAIYSRRVMLALAKEVISKRTTNTHPYSKLFQTQSSSSGSTLDIIQPLIPQHQHGTNHYSLVHDVDKARLASVVKDKNLEAYAEFGGVKGVANILGTIPGKGISGNDDDVAKRRELFGSNTYQRPPPKVFLSFVLEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVAVTALSNFRQERQFEKLSKISNNIKVEVVRNGRPQQISIFDVLVGDIASLKIGDQIPADGLFLSGHSLQVDESSMTGESDHVEIEPSNSPFLLSGAKVVDGFAQMLVTSVGTNTAWGEMMSSISQDTKERTPLQARLDKLTSSIGKVGLAVAFLVLVVLLIRYFTGNTQDDKGNQEFQGSKTDVNDVFNTVVQIVAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFGLGLENVTENFSNAMAPNVLELFHQGVGLNTTGNIYKPSSESEPEISGSPTEKAILLWAVSDLHMDMDELKCTHEVLHVETFNSEKKRSGVAIRKKTNNTIHVHWKGAAEIILAMCSNYIDNNGIEKPLDEERSKLEKIIQGMAASSLRCIAFAYMQISEDIDCNDKEKAQQILRKDGLTLLGIVGIKDPCRPDVKKAVEACKLAGVRIKMITGDNIFTAKAIATECGILDLDDHENAEVVEALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKQPVGRTEPLITRIMWRNLLAQALYQIVVLLVLQFKGKSIFNVNAKVKDTLIFNTFVLCQVFNEFNARSMEKVNVFQGIHKNHLFLGIVGITIVLQVVMVELLKKFADTERLTWEQWGICIGIAAMSWPIAWVTKLIRVKWVKLLVFKVKHLF 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0231 928 SUPERFAMILY Calcium ATPase, transduction domain A 243 342 IPR008250 -
Aed4g0231 928 ProSitePatterns E1-E2 ATPases phosphorylation site. 470 476 IPR018303 -
Aed4g0231 928 SMART Cation_ATPase_N_a_2 123 197 IPR004014 -
Aed4g0231 928 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 408 492 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0231 928 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 212 385 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0231 928 SUPERFAMILY HAD-like 465 716 IPR036412 -
Aed4g0231 928 Pfam E1-E2 ATPase 244 446 - -
Aed4g0231 928 Gene3D - 727 921 - -
Aed4g0231 928 Gene3D - 175 464 - -
Aed4g0231 928 PANTHER CALCIUM-TRANSPORTING ATPASE 19 726 - -
Aed4g0231 928 PANTHER CALCIUM-TRANSPORTING ATPASE 726 907 - -
Aed4g0231 928 Pfam Cation transporting ATPase, C-terminus 742 912 IPR006068 -
Aed4g0231 928 Gene3D - 146 344 - -
Aed4g0231 928 PRINTS Sodium/potassium-transporting ATPase signature 588 606 - -
Aed4g0231 928 PRINTS Sodium/potassium-transporting ATPase signature 461 482 - -
Aed4g0231 928 Pfam haloacid dehalogenase-like hydrolase 639 724 - -
Aed4g0231 928 Gene3D - 465 721 IPR023214 -
Aed4g0231 928 Gene3D - 478 675 IPR023299 GO:0000166
Aed4g0231 928 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Aed4g0231 928 PRINTS P-type cation-transporting ATPase superfamily signature 291 305 - -
Aed4g0231 928 PRINTS P-type cation-transporting ATPase superfamily signature 668 679 - -
Aed4g0231 928 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Aed4g0231 928 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 113 718 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Aed4g0231 928 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 474 680 IPR023299 GO:0000166
Aed4g0231 928 PANTHER CATION TRANSPORTING ATPASE 19 726 - -
Aed4g0231 928 Pfam Cation transporter/ATPase, N-terminus 125 192 IPR004014 -
Aed4g0231 928 Pfam Cation transport ATPase (P-type) 522 603 - -
Aed4g0231 928 PANTHER CATION TRANSPORTING ATPASE 726 907 - -
Aed4g0231 928 SUPERFAMILY Calcium ATPase, transmembrane domain M 123 917 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0231 Aed-Chr4 1659599 1662736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0231 726 922 Primary Pumps ATPases AT3G63380 72.589 3.71e-89 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0231 K01537 - gmx:100790034 1250.34