Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1572 ATGCCCTCTTCTCTAGCAGTCTCTTGCTCCAGCATGCAATGCGAAAACAGCGATCTTATGCTTGGGAATGTTACTGTGCAACATAGTAGTTCTGGTTGCAATGTTACGTCTTGCAACTATGATGGATTGCAGCGGTTTTTCCCTCCACTTATAGCCCCACCTACATCTGTTACAAGGGAATCGTCATTTACCTTCACCCCATCACCATCGCCATCATCATCGTTGCAATCAGAAGGAACTGGTCTAGTGGCACCGAAATCTTCAGTGGTGCCTCCAACAGGATCAATTCCAGGATTCTCACCTGCAAATGGCCCTGTTAGTACTATTATTATTACTGATACTTCTGCTGCTCCCTCCTCGTCCTTGGTGAATCCTATGCCTATTTCCACGTTTGCATTTATGCTATTGCTTGTAAAGTTGATGATACTTGTGGCTTTGTAA 441 0.4467 MPSSLAVSCSSMQCENSDLMLGNVTVQHSSSGCNVTSCNYDGLQRFFPPLIAPPTSVTRESSFTFTPSPSPSSSLQSEGTGLVAPKSSVVPPTGSIPGFSPANGPVSTIIITDTSAAPSSSLVNPMPISTFAFMLLLVKLMILVAL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1572 146 MobiDBLite consensus disorder prediction 58 87 - -
Aed3g1572 146 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 1 84 - -
Aed3g1572 146 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 1 84 - -
Aed3g1572 146 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1572 Aed-Chr3 20158896 20160008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1572 2 109 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 45.736 1.85e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1572 - - pvu:PHAVU_008G163700g 150.599