Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1571 ATGCAAAATCAAAACCCCATTTTGCATTGCACCTTCCTCTTGTTACTCTTGTTGCATGTTCTCCTCAATGCAGCTCCTATGAGATGCAAATCCACCATAGAGCCATGCTCCAACAATGACTCATGCAATGCTCTTCTTGGCTACACCCTCTACACTGACCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTACTCTTCTCGCCGCCAATGCCATTGACATCTCCGATCCTGATGTAGAACATCACATTCTCCCTTCCAAGCTCTTCCTCAAGGTCCCTATCACATGTTCATGTGTTGATGGCATTAGAAGAAAATCAGTGTCTACCCTTTACAGATCTAGACCTTCTGACACTCTCTCTTCCATTGCAAATTCAGTATATGGGGGTTTAGTGTCCTCTAATCAGCTTAGGGAGGCTAATTCTATAGCTGATCCTTCAGTTCTTGATATTGGTCAGAGCCTTGTGGTGCCACTTCCATGCACTTGCTTCAATGGGACTGATAACTCTTTGCCTTCAATTTACCTCTCTTATGTGGTCCAGCCAATTGATACATTGGCTGCAATTGTAGATAGATATTTCACCACTCTTACTGATGTCATGAATGTCAATGACATGGGGACTACAGCTATCTCTGATGGAGATATTCTTGCTATTCCAATACCTGCTTGTGCATCAAATTTTCCAAAATATGCTTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTATACCATTACAGCTAGTCACTGTGTGCAGTGTAGCTGTGGACCAAGAGATTTGAAGTACTAA 801 0.4282 MQNQNPILHCTFLLLLLLHVLLNAAPMRCKSTIEPCSNNDSCNALLGYTLYTDLKVSEVASLFQIDPITLLAANAIDISDPDVEHHILPSKLFLKVPITCSCVDGIRRKSVSTLYRSRPSDTLSSIANSVYGGLVSSNQLREANSIADPSVLDIGQSLVVPLPCTCFNGTDNSLPSIYLSYVVQPIDTLAAIVDRYFTTLTDVMNVNDMGTTAISDGDILAIPIPACASNFPKYASDFGLLVPNGSYTITASHCVQCSCGPRDLKY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1571 266 CDD LysM 180 222 IPR018392 -
Aed3g1571 266 ProSiteProfiles LysM domain profile. 179 222 IPR018392 -
Aed3g1571 266 Gene3D LysM domain 170 230 IPR036779 -
Aed3g1571 266 SMART LysM_2 180 223 IPR018392 -
Aed3g1571 266 SMART LysM_2 114 161 IPR018392 -
Aed3g1571 266 CDD LysM 115 160 IPR018392 -
Aed3g1571 266 Pfam LysM domain 181 223 IPR018392 -
Aed3g1571 266 Pfam LysM domain 119 161 IPR018392 -
Aed3g1571 266 Gene3D LysM domain 112 169 IPR036779 -
Aed3g1571 266 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 14 259 - -
Aed3g1571 266 SUPERFAMILY LysM domain 179 224 IPR036779 -
Aed3g1571 266 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 14 259 - -
Aed3g1571 266 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1571 Aed-Chr3 20156997 20158407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1571 12 264 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.157 1.63e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1571 - - pvu:PHAVU_008G163700g 442.58