Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1149 ATGAACAATTTTGCAAACGACGCTACATTGCCATTGAATCTCAACATTAAGGGCAATGATGCGATCCAATCTAATGGCTTCAAAGCTCCATCATCTTCCAAGCAACCCTTTTTTATTGGGGTTGCTGGTGGAACTGCATCTGGGAAAACAACGGTATGCAACAAGATAAATACTCAACTTCATGATCAACGTATTGTCGTCATTACTCAAGACTCATTTTACCACTCATTGAATGACAAGATGCTACAGAAAGTTAATGAGTACAATTTTGATCATCCTGATGCCTTTGATACAAAACTTTTGCTTTCAACAATGGAGAAATTAAAATGTGGACAACCTGTTACAATACCAAATTATGATTTCAACACCCATAAAAGAGATGAAGTTGGACGTCAGCTTCAACCTGCAGATATCATAATTTTAGAAGGGATATTAGTTCTTCATGATCCTGGTGTTCGTAATCTTTTGAACATGAAGATATTTGTTGATGAAGATTCTGATGTGCGCCTTGCACGAAGGATGCGACGTCTTGTTGTGGAGCGTGGGAGGAATATTGAAAATGTTCTAGACCAGTATTCCAGATTTGTAAAGCACAGTTTTGAAGATTTTGTATTGCCAACTAAAAAGTATGCTGATATTATCATTCCAAGTGGAGGAGATAATGAAGTTGCCACTGACTTAATAGTACAAAACATACGTATGAAGCTTGGTCAACATGATTTGTGTAAAATATATCCCAATATTTTTATTATATTTTCAACATTTCAGATAAAGGGAATGCATACTCTTATTCGTGATGTTAAGGCAACAAAGCACGACTTTGCCTTTTACTCAGACCGTCTTATTAGATTGGTTGTCGAGCATGGATTGGGTCACCTTCCTTTCTCTGAAAAACAGGTGATAACACCAACAGGATCTGTATACTCTGGTGTAGTTTTTTGTAGCAGTTTGTGTGGAGTATCAGTTATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGTTGTAAGGGAATCAAGATTGGGAAAATCCTTATTCATGGACAAGGCACAAATGGACGGCAGTTAATCTATGAGAAGCTACCAAAAGACATTGCAAGTCGTCATGTGTTGCTACTCGATCCAGTTTTGGCCACAGGAAACTCTGCCGTCAAAGCTATCTCTTTGCTTCTCAACAAAGGTGTACCTGAATCTAACATTATATTTCTAAATTTAGTAGCAGTGAGTCACTTTCATTTGTTATTTGCTTCTTTATCTTTACATGCATGTGTTTATGCTCTTAGACAGATTGATGCATCACTGAATGAGAATTCTCATGTGATCCCTGGCTTAGGAGAGTTTGGAGATCGTTACTTTGCCACTGATGATTAA 1374 0.3734 MNNFANDATLPLNLNIKGNDAIQSNGFKAPSSSKQPFFIGVAGGTASGKTTVCNKINTQLHDQRIVVITQDSFYHSLNDKMLQKVNEYNFDHPDAFDTKLLLSTMEKLKCGQPVTIPNYDFNTHKRDEVGRQLQPADIIILEGILVLHDPGVRNLLNMKIFVDEDSDVRLARRMRRLVVERGRNIENVLDQYSRFVKHSFEDFVLPTKKYADIIIPSGGDNEVATDLIVQNIRMKLGQHDLCKIYPNIFIIFSTFQIKGMHTLIRDVKATKHDFAFYSDRLIRLVVEHGLGHLPFSEKQVITPTGSVYSGVVFCSSLCGVSVIRSGESMENALRACCKGIKIGKILIHGQGTNGRQLIYEKLPKDIASRHVLLLDPVLATGNSAVKAISLLLNKGVPESNIIFLNLVAVSHFHLLFASLSLHACVYALRQIDASLNENSHVIPGLGEFGDRYFATDD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1149 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 228 IPR027417 -
Aed3g1149 457 Pfam Phosphoribulokinase / Uridine kinase family 38 223 IPR006083 GO:0005524|GO:0016301
Aed3g1149 457 Pfam Uracil phosphoribosyltransferase 253 455 - -
Aed3g1149 457 PANTHER URIDINE KINASE 16 452 - -
Aed3g1149 457 SUPERFAMILY PRTase-like 238 455 IPR029057 -
Aed3g1149 457 PANTHER URIDINE KINASE-LIKE PROTEIN 5 16 452 - -
Aed3g1149 457 PRINTS Uridine kinase signature 167 177 - -
Aed3g1149 457 PRINTS Uridine kinase signature 181 192 - -
Aed3g1149 457 PRINTS Uridine kinase signature 203 216 - -
Aed3g1149 457 PRINTS Uridine kinase signature 36 53 - -
Aed3g1149 457 PRINTS Uridine kinase signature 111 126 - -
Aed3g1149 457 PRINTS Uridine kinase signature 66 77 - -
Aed3g1149 457 TIGRFAM udk: uridine kinase 34 235 IPR000764 -
Aed3g1149 457 Gene3D - 246 456 IPR029057 -
Aed3g1149 457 CDD UMPK 38 233 IPR000764 -
Aed3g1149 457 Gene3D - 34 245 IPR027417 -
Aed3g1149 457 CDD PRTases_typeI 317 411 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1149 Aed-Chr3 9506280 9513329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1149 14 457 PRT Gene Family AT4G26510 67.627 0.0 615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1149 3 9506280 9513329 Aed7g0262 7 1847376 1851202 ECH
Aed3g1149 3 9506280 9513329 Aed3g1149 3 9506280 9513329 ECH