Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1106 ATGCGAATGAGTTGTAACGGATGTCGTGTTCTGCGGAAAGGGTGCAGCGAAGATTGCAGCATAAGACCGTGTTTGGAGTGGATAAAGAACCCAGAGTCGCAGGCTAATGCCACTGTTTTTCTTGCTAAGTTCTATGGCCGTGCTGGCCTCATGAACCTCATCAACGCTAACCCTCAAAACCTTCGTCCTGCGGTTTTTCGATCCTTGCTATACGAGGCATGTGGTCGAATTGTTAACCCAATCTACGGGTCAGTGGGTTTGTTATGGTCCGGGAGCTGGCAGCTATGTCAAGCCGCTGTGGAAGCCGTTTTGAGAGGCGAGCCGATCACGCCGATAACAACTGAAGCCGCGGCTAACGGGCAGGCCCCACCCCTGAAGCCCTATGACATACGTCACGTGCCAAAAGATGAGAACTCGGCAAAGGAAACTCCAAAGGTTAAGAGCACGTCCCGGTTCAAGCGAACTGGTAGCACGCCTATCAAGCCAAAGGCAAGCAAGAGAACCGGGTTTGCCCAGGTTGAACTGGAGATGGCGAATCGGACCACAAGTCACGAGTCGGGACTGAGCCACTTGTCAGAAGTAGCAGCGATGGTTGAGGGAGAGAGCAAAGAGAGTGAGAGCGTGCTGTCGATGGATACGTTAAACCAATTTCATGATGAACCGGAGTCGGTTGCAATGACGAGTGACCAAATCGATAAGAGTGGTAACGAAATCGGTTTGGAATTGACGCTCGGGTTTGAACCGGTCTCACGTGTGCATCACGTGGTTCCGATGAAGAAGAGAAAAGTAATCGAGTTGAAGAGTTGTGGTGACTCGGCTGAGACAGACTCGTGTAAGATGGAGTTGGGGCTTGAGTACTCGGCTTGA 867 0.5156 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKNPESQANATVFLAKFYGRAGLMNLINANPQNLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLRGEPITPITTEAAANGQAPPLKPYDIRHVPKDENSAKETPKVKSTSRFKRTGSTPIKPKASKRTGFAQVELEMANRTTSHESGLSHLSEVAAMVEGESKESESVLSMDTLNQFHDEPESVAMTSDQIDKSGNEIGLELTLGFEPVSRVHHVVPMKKRKVIELKSCGDSAETDSCKMELGLEYSA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1106 288 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 285 - -
Aed3g1106 288 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 285 - -
Aed3g1106 288 MobiDBLite consensus disorder prediction 135 149 - -
Aed3g1106 288 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Aed3g1106 288 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Aed3g1106 288 PIRSF AS2 1 287 IPR017414 -
Aed3g1106 288 MobiDBLite consensus disorder prediction 135 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1106 Aed-Chr3 8933959 8937533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1106 1 284 AS2 family AT3G02550 59.516 2.53e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g1106 LOB 1.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1106 3 8933959 8937533 Aed3g1106 3 8933959 8937533 ECH
Aed3g0057 3 502360 504157 Aed3g1106 3 8933959 8937533 ECH
Aed1g1848 1 15834582 15835229 Aed3g1106 3 8933959 8937533 ECH