LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g0662	ATGGATGATTACGCGAGCAGCGACGAGGATTACCATTACGACTCCGATCAGGAGGACTCCGTCGAGGCCTACGAAAACGACGAGGATTACGCGTTTCCCTCTTCCAAGGGTCCCACTACTAAGGTGATTACAAAGGAATCACTGCTAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCAGTGAGAGAGCAACATGCTCGTACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAATCTGTTTGCAGTGTTAGTTGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGTGACTCTGCCTCACCCGTTCCTCCTGATTTCATGTGCAACATCTGTATGGAAGAAGTTCCTAGTGCGAAAACAACGAGAATGGACTGTGGTTGGATAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGACGAAGCCCTCGTGAGAACTCTACTCAGTAGAGAGCATTCTCATATAGCAGAGAAGTATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGCGGGAATGCAATACGGGTCGAGGATGATGAGTTGTGTGAGGTAGAATGTTCATGCGGTGTACAATTTTGTTTTAGTTGTTTGTCAGAGGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAATTGGTTGTGTGGTGGAGCTACTGGCCGAGAGCATACATGGTCAAGTATAGCTGGTCATAGCTGTGGTCGTTACAAAGAGCAAGAAAAAACAGCTGAACGTGCAAAGAGGGATCTATATAGGTATATGCACTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGGCTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGACGCTCAAAGGGAAATCAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATTAGGATGCAGATACTCAACCTTTCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTCCATATTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATTGAGAGGGCATCAGAACTTTCAGTTTGCTGGAACAACAAAGTCAATAATACTGGTGTAACAGATGAACTTGATCGGCCATCTGGATCAGGGAGTTCAGACGATAATGGATGCTCTTCTCGTAAACGTCCTAGAAAAGATGGTGGTCTTGGTGGTGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTTCATTCCCCCCATTTGCTTTCATATCTGAGATAAGATATGTTTCCAAAGTTTTTCTTATTCCTATGCCGTCATCTACTTTTCTGTTTGAAATCCTAGCGCTTTTCAATTTTCAAACAATATTATATTCCAAAGAACAAGTAGTTGGTGCAAGTGGTAATGAATTCAATTTTTTTAAAGCAAGATTTCGGATTCAAGTATTAAAAGCTAAACAACAACAAAAACGAAAAAAGCAGGAAAAGGAACAACTAGTTTCTAACAAAGGAGATGCGTTGAGGAATCAGACTCACAAACCTCCTGTCTATAGCCCAAGTCCCAATGAAACAAAATCAGGTTTCAGGTATTGA	1986	0.4068	MDDYASSDEDYHYDSDQEDSVEAYENDEDYAFPSSKGPTTKVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVENLFAVLVDKGKSFLFAEAGVSVDEHRDSASPVPPDFMCNICMEEVPSAKTTRMDCGWIEHFIVKINEGQSKRIRCMEHKCNSICDEALVRTLLSREHSHIAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGVQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPNWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHIGIHSIAPYKSKGIERASELSVCWNNKVNNTGVTDELDRPSGSGSSDDNGCSSRKRPRKDGGLGGGGFFDLNLPAEFSFPPFAFISEIRYVSKVFLIPMPSSTFLFEILALFNFQTILYSKEQVVGASGNEFNFFKARFRIQVLKAKQQQKRKKQEKEQLVSNKGDALRNQTHKPPVYSPSPNETKSGFRY	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g0662	661	Pfam	Ariadne domain	300	547	IPR045840	-
	Aed3g0662	661	MobiDBLite	consensus disorder prediction	620	661	-	-
	Aed3g0662	661	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	116	198	IPR013083	-
	Aed3g0662	661	Coils	Coil	613	633	-	-
	Aed3g0662	661	MobiDBLite	consensus disorder prediction	504	529	-	-
	Aed3g0662	661	MobiDBLite	consensus disorder prediction	1	38	-	-
	Aed3g0662	661	ProSiteProfiles	TRIAD supradomain profile.	116	324	IPR044066	-
	Aed3g0662	661	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	6	486	-	-
	Aed3g0662	661	MobiDBLite	consensus disorder prediction	634	661	-	-
	Aed3g0662	661	Pfam	IBR domain, a half RING-finger domain	184	246	IPR002867	-
	Aed3g0662	661	MobiDBLite	consensus disorder prediction	504	520	-	-
	Aed3g0662	661	MobiDBLite	consensus disorder prediction	1	26	-	-
	Aed3g0662	661	SMART	ibrneu5	184	246	IPR002867	-
	Aed3g0662	661	SUPERFAMILY	RING/U-box	184	252	-	-
	Aed3g0662	661	Gene3D	-	242	275	-	-
	Aed3g0662	661	Gene3D	-	276	466	-	-
	Aed3g0662	661	SUPERFAMILY	RING/U-box	116	196	-	-
	Aed3g0662	661	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	6	486	IPR031127	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g0662	Aed-Chr3	4700797	4715980	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g0662	60	524	ARIADNE family	AT2G16090	63.928	0.0	643

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g0662	K11968		-	gmx:100783343	1048.5