Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0437 ATGCAACTGCATGTACCAGATCGGAGCCCCGACATGGTACGAGGAATCGACGTCAATTCGGCGGCGGAGTGCGACGAAGACAACGGCGTTTCCTCGCCGAACAGTGCTGTCTCGAGCGTGAGTGGAAACAAGCGAAGCGAAAGGGACGACGATAATGCTGCCGCCGTGGCTGGTGAGAGGATCTCGTACTCTCAAGGGAGTGACGACGACGATGGTGGTGGCGGCGACGCTGCCGGGAGGAAGAAGCTAAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACATTCAAGGAGCATAACACGCTCAATCCGAAACGGAAGCAATCGTTGGCAGAGGAGTTGAATCTGAAGCCCAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAAATGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGATAATTTAACTGAAGAGAATAGAAGGTTGCACAAGGAGGTGCAAGAGCTTAGGGCATTGAAATTATCTCCACAAATGTACATGCATATGAACCCTCCCACCACTCTCACAATGTGCCCTTCTTGTGACCGTGCTCACTCCTCTGCATCTTCCTCCCCTGCCACCGTCCACTCAGTGGCGGCAGCAGCCACATTGAGCAACCGCAAACTGTTCAGCGCAAACATCCGGCGGTCAGTGCCCGTCAACACTTGGCCATTTGAAGGCCGGATTCCTCGGCCATAA 729 0.5254 MQLHVPDRSPDMVRGIDVNSAAECDEDNGVSSPNSAVSSVSGNKRSERDDDNAAAVAGERISYSQGSDDDDGGGGDAAGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQSLAEELNLKPRQVEVWFQNRRARTKLKQNEVDCEYLKRCCDNLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCDRAHSSASSSPATVHSVAAAATLSNRKLFSANIRRSVPVNTWPFEGRIPRP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0437 242 Gene3D - 63 140 - -
Aed3g0437 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 11 234 - -
Aed3g0437 242 SMART HOX_1 78 140 IPR001356 GO:0003677
Aed3g0437 242 MobiDBLite consensus disorder prediction 1 82 - -
Aed3g0437 242 SUPERFAMILY Homeodomain-like 68 137 IPR009057 -
Aed3g0437 242 MobiDBLite consensus disorder prediction 25 42 - -
Aed3g0437 242 PANTHER - 11 234 - -
Aed3g0437 242 Pfam Homeodomain 80 134 IPR001356 GO:0003677
Aed3g0437 242 SMART halz 136 179 IPR003106 GO:0006355|GO:0043565
Aed3g0437 242 CDD homeodomain 80 137 IPR001356 GO:0003677
Aed3g0437 242 Pfam HD-ZIP protein N terminus 11 49 IPR006712 GO:0005634
Aed3g0437 242 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Aed3g0437 242 Pfam Homeobox associated leucine zipper 136 170 IPR003106 GO:0006355|GO:0043565
Aed3g0437 242 Coils Coil 149 169 - -
Aed3g0437 242 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0437 Aed-Chr3 3113845 3117099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0437 7 193 Homeobox Transcription Factor Family AT3G60390 63.810 3.79e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed3g0437 Homeodomain 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0437 K09338 - gmx:100819624 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0437 3 3113845 3117099 Aed3g0437 3 3113845 3117099 ECH
Aed2g1786 2 22509452 22513664 Aed3g0437 3 3113845 3117099 PCT