Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0382 ATGTGGCACTTCTACCTGCTTCACCGGATCAACAACAAAACGCACAATCAACCACACTCTCACACAACGTGTCATACCTTCTTCTCTCTCTCTCTACACTTTTTCTCTTTCTCTCTCCAACACCACCCTTTTTCCTTTTCTTTTACAGTTTGTTTTTCCACATTTGAGACAAAAACAAAAGTAAAGAGGCTTATTTTGTTTGGGTCCTTTTTTATTGGCAAAAAAAGGATAACGAAAATGTCGGAGGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCGGATATTCCCCCGGGATCCGCCGGAGCTCCGGCGTCGTCTTCCGGTGATGTTGTTGACGACAGTGTTGACGCTTCTTCCACCAACTCTTCGAGGGAGTCTCATAGCAACAGAGATGCACAAGAGAAGGATTTTGATAAGGACACACTGGGAGAAAAATCAACTGATGACAAAAAGGAAGATGGAGCCCCCACCCAGTCATCGGAAGAGGTCACCAATCCAGATACTGCATCTAGAACGTGTGAAGAATCCGTTACCCTGTCCACCGAGAGGGAGGCTACTACATTGAAAAGCTCTAAGACTGAAGAAGAACAGGGAGATACAAGTAATTCACAGGATAAGAACCTCAAGAAACCAGACAAAATACTCCCTTGTCCTCGCTGTAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGCCACTTCTGCAAGAATTGCCAGAGATATTGGACTGCTGGGGGGACCATGAGGAACGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGTTCAGCTTCTCACTATCGCCAGATAACTGTTTCTGAAGCAGCACTCCAGAATCCTCAAACGGACTTGCCAAATGGAGCATATCATCCTTCCTTGAAGTGCAATGGCACAGTCCTGACATTTGGAACCGATACACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAACCGTGCACAATTACACAAGAAATGGATTTCATAAACCTGAAGAACTAAGAATTCCTGTTCCCCATGCCAGTGGAGAAAAAGGGGATGATCAATCTAATAAATCATTGGTTACCTCCACAACGTCTGTTGAAGGTGCAAGCACCAATGGACCTAATGAACAAGTTATGCAGAATTGTCAGAGCTTTCCACCACAGGTTCCTTACTTTCCTGGGACCCCCTGGCCTATCCCATGGAATCCAGTGCAATGGAGTTCTCCAGTACCACCACCTGCTTTTTGTCCACCTGGATTTACCATGCCATTCTATCCTGCAACAGCTTATTGGGGTTGTGCTGTGCCAGGTGCGTGGAACATCCCATGGCTAGCACAACCATCATCACCGAATGGTGCAACACCTAACTCTGGCCCCAACTCCCCAACCTTGGGTAAACATTCAAGAGAAGACAACACATTCAAACCAAATGAGTCAGGCGGCGAGGATGGACACAGCAAAGAAAACAACAAAGAAAAGAGCCTGTGGGTTCCAAAAACTTTGAGGATTGATGACTCGGGAGAAGCAGCAAAAAGCTCTATATGGGCAACTCTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTGGGGGAACACTCTTTAAAGCCTTCCCTTCAAAGCATGATGACAAAAACCATTCAATGCAAGCCTCGCCAGTCTTGCAGGCCAATCCAGCGGCATTGTCTAGGTCACTTAACTTTCATGAGACCTCATAA 1746 0.4622 MWHFYLLHRINNKTHNQPHSHTTCHTFFSLSLHFFSFSLQHHPFSFSFTVCFSTFETKTKVKRLILFGSFFIGKKRITKMSEAKDPAIKLFGKTIPVPDIPPGSAGAPASSSGDVVDDSVDASSTNSSRESHSNRDAQEKDFDKDTLGEKSTDDKKEDGAPTQSSEEVTNPDTASRTCEESVTLSTEREATTLKSSKTEEEQGDTSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHYRQITVSEAALQNPQTDLPNGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTVHNYTRNGFHKPEELRIPVPHASGEKGDDQSNKSLVTSTTSVEGASTNGPNEQVMQNCQSFPPQVPYFPGTPWPIPWNPVQWSSPVPPPAFCPPGFTMPFYPATAYWGCAVPGAWNIPWLAQPSSPNGATPNSGPNSPTLGKHSREDNTFKPNESGGEDGHSKENNKEKSLWVPKTLRIDDSGEAAKSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNHSMQASPVLQANPAALSRSLNFHETS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0382 581 MobiDBLite consensus disorder prediction 558 581 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 478 504 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 547 581 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 163 191 - -
Aed3g0382 581 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 80 580 - -
Aed3g0382 581 ProSiteProfiles Zinc finger Dof-type profile. 220 274 IPR003851 GO:0003677|GO:0006355
Aed3g0382 581 MobiDBLite consensus disorder prediction 346 362 - -
Aed3g0382 581 PANTHER CYCLIC DOF FACTOR 2 80 580 IPR045174 GO:0003700|GO:0006355
Aed3g0382 581 Pfam Dof domain, zinc finger 217 274 IPR003851 GO:0003677|GO:0006355
Aed3g0382 581 MobiDBLite consensus disorder prediction 116 131 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 459 477 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 459 504 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 95 220 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 132 162 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 192 218 - -
Aed3g0382 581 MobiDBLite consensus disorder prediction 363 393 - -
Aed3g0382 581 ProSitePatterns Zinc finger Dof-type signature. 222 258 IPR003851 GO:0003677|GO:0006355
Aed3g0382 581 MobiDBLite consensus disorder prediction 346 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0382 Aed-Chr3 2697817 2701715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0382 85 581 C2C2-Dof Transcription Factor Family AT5G39660 46.169 1.18e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed3g0382 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0382 - - gmx:100784308 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0382 3 2697817 2701715 Aed10g1055 10 9360934 9364906 ECH
Aed3g0382 3 2697817 2701715 Aed6g1582 6 19849705 19853408 ECH
Aed3g0382 3 2697817 2701715 Aed3g0382 3 2697817 2701715 ECH
Aed11g0371 11 3143865 3147102 Aed3g0382 3 2697817 2701715 ECH