Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0120 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAACCAAATCAGCCAGCAGGAATTGGCAGCCAGAATCCACAGATTCCACCGTCTCTGCAGCCGCCACCTTCATCGGTGGCGGCTGCTATCGAAGGCGGTGGCTATCAGGCTGGCTCTATCAGACCAGGATCAATGGCTGATAGAGCCAGGATGGCTAAGATACACCAACCCGATGCAGTACTAAAATGTCCACGATGTGAATCTACCAACACCAAGTTTTGCTACTACAACAACTACAGCCTCTCACAGCCTCGCCACTTTTGCAAGACTTGCCGTCGTTACTGGACCAGAGGAGGTGCACTAAGAAGCGTACCAGTTGGAGGTGGCTGTAGAAGGAACAAAAGAAGCAAAGGAAGCAGTGGTAGATCAAAGTCTCCTATGAAACCTTCAACAGGTTCTATAGCTACCTCAGCAAGTGCTAATTCTTCTTCTAGTGGCTGCACCCCTCATGATCATGTGATGATGACTCATTTGCCAACTCCAACACCAACTCATCAATTCCCATTCTTGGCCTCTTTACACCATTATAATAACAGCGACTACGCTTCTGGGGGCATTGGATCTCATCCTTTTGGGGCGATCACAACACCTTTGGTGGCTAGAAATGGCAACACTGCTACTAGTGATGTTGAGTTTCAAATTGGTACTAGTTCAGCTTTATCACTTGGTAATAGTGGTGGGGCTATGCTGTCATCAAATAATGGCCTTGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAACATCAGTTCCCTTTCTTGAGTACTAATTTGGAGCCACAAATTGGAGTGTTTCAGTTTAGTGGTGGAGAAAATAACAATAATGCTGAACCACCAAGTTATGGGAAGGATATTGGAGGCCGGTTTAATATTCGTTCTAAAATGGATTCTATTTCTAGTGTAAGTGGAATAGTGCCTCAGGTTAACACAATAAAGCTGGAAGAAAATCAAGGTTTGAGTTTGCCAAAAAATCTCCTGATGAGTAGTAGTAGTTTGGGAAATGGTGTGTTTTGGAATGGAAGTAGTGGCAGTGCATGGAGTGAAGTTCCTAGTTTCACTCCTTCACCTAACCACTTGTTGTGA 1140 0.4518 MVFPSLPIYLDPPNWSQQQPNQPAGIGSQNPQIPPSLQPPPSSVAAAIEGGGYQAGSIRPGSMADRARMAKIHQPDAVLKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGSSGRSKSPMKPSTGSIATSASANSSSSGCTPHDHVMMTHLPTPTPTHQFPFLASLHHYNNSDYASGGIGSHPFGAITTPLVARNGNTATSDVEFQIGTSSALSLGNSGGAMLSSNNGLGEQWRLNNLQQVQHQFPFLSTNLEPQIGVFQFSGGENNNNAEPPSYGKDIGGRFNIRSKMDSISSVSGIVPQVNTIKLEENQGLSLPKNLLMSSSSLGNGVFWNGSSGSAWSEVPSFTPSPNHLL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0120 379 MobiDBLite consensus disorder prediction 140 168 - -
Aed3g0120 379 Pfam Dof domain, zinc finger 77 133 IPR003851 GO:0003677|GO:0006355
Aed3g0120 379 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 10 363 - -
Aed3g0120 379 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 363 IPR045174 GO:0003700|GO:0006355
Aed3g0120 379 MobiDBLite consensus disorder prediction 11 32 - -
Aed3g0120 379 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Aed3g0120 379 MobiDBLite consensus disorder prediction 11 44 - -
Aed3g0120 379 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Aed3g0120 379 MobiDBLite consensus disorder prediction 123 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0120 Aed-Chr3 875233 877970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0120 1 135 C2C2-Dof Transcription Factor Family AT2G37590 56.552 1.25e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed3g0120 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0120 - - gmx:102662809 553.132