Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2040 ATGGAGAATGTTGAGATGAATATTAATTCATCACCAAATTGTCCAAGGTGTGGTTCTACGAATACCAAGTTCTGCTACTACAATAACTACAGTTCAACTCAGCCACGGTATTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGGTCCCTCCGCAACGTGCCTGTTGGTGGTGGCTGCCGAAAAACTAGAAGGGGTAAGTATAACAAGACCTTATTAAGACAACAAGCCAATAATAACTCGGTTCTTGATTTAAGGGCTTCATCTAATTCAGTGGTGTCTGATGCTCCAAATAATATTGATCTTGCACAAGTTTATGCAAGTTTTCTCAACCACAAGCCTGCAGATCCTCATCAAGCTGTTCAAACAGTTCGCGATCCTAATTATTCTCCAGATTATTCAAGCCTATTCAACCCTACTGACTTTGGCCACAGTGCTTTGTCTGATCAAGAATTTGGTACTCTCACTGAACAATCCAGTGAGAGTATGATCCAAATGTATCTTTGCGGCTTCAACTCTATCCAGAAGCATGATCAGGAATACTATAGTAGCAGTTATGATACCACAAATAATATTAGAAATTTTGATCAGTTGCCACCGTTGCCAGGTGAAGAGGCAGAAACCTCACACGATGATATGTTGTGGTCCAAATCCAATTATTCCGAGGCTTACTCTTCATCTTGCAATAAACAATTAATTTCTTGGCTCCATATATAA 720 0.4042 MENVEMNINSSPNCPRCGSTNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRGKYNKTLLRQQANNNSVLDLRASSNSVVSDAPNNIDLAQVYASFLNHKPADPHQAVQTVRDPNYSPDYSSLFNPTDFGHSALSDQEFGTLTEQSSESMIQMYLCGFNSIQKHDQEYYSSSYDTTNNIRNFDQLPPLPGEEAETSHDDMLWSKSNYSEAYSSSCNKQLISWLHI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2040 239 ProSiteProfiles Zinc finger Dof-type profile. 12 66 IPR003851 GO:0003677|GO:0006355
Aed2g2040 239 Pfam Dof domain, zinc finger 12 65 IPR003851 GO:0003677|GO:0006355
Aed2g2040 239 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 226 - -
Aed2g2040 239 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 226 IPR045174 GO:0003700|GO:0006355
Aed2g2040 239 ProSitePatterns Zinc finger Dof-type signature. 14 50 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2040 Aed-Chr2 24791705 24793151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2040 3 219 C2C2-Dof Transcription Factor Family AT3G52440 43.779 2.39e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed2g2040 zf-Dof 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2040 - - gmx:778109 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2040 2 24791705 24793151 Aed2g2040 2 24791705 24793151 ECH