Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0552 ATGTTACAAGTAAACATAAATATTCTCACTGCATTCGGAAGTAGCTTAATCATGACTGCAAAGGGACAGAAATTTGTGAGGTTTAAGGATTGGAAGTCACTTTCATCTTCAAGTATTGAGCACGATGTTTCTACTAGTGCCGGATTTAACAAAAGAAAACTTCAATCAAGCATGGTCATTTTAGCTATGATCCCATTCCCAAAATGCGCAGTTCCTTATGTGGGAAAGGATTTGTTGAAGTATACCATAATAGCTCAATACGTTCCAAGACTTTTGCGGATTTACCCGTTATTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCTGTAGAATCAAGGTTGCGGTGCTGGCGCAGACAGTTGAAGAATGTTATGTTCTTTCATGAATCCTTCCTTAGCTGTGGAGGACGTGGCAATCCTACTGTTCTATCACATCTCAATTCTTCTTGCCCTTTTAAAGATCCACAAGAGAGTGAAGACTTGGAAACTTTCAATTTTGGAATGTTTATAGAAGCTCTAAAGTATCGCGTGGTGGAAAACACTACAGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTCTCCAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTTTATTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCTGATATCCTGAAGGAAAGAATTAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCACAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCAGAGAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTATTCATCATGCGTGGAAAACTTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATAAAGCCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCCAACTCCTCCACAAATCTACCTATTTCAACCAGAACAGTGGAAACTATATCAGAAGTAGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTCTACTCCTTGCAATGGAAGACATGGGGTGCATGTTTCATACAAGCAGCTTGGCGCAGATACAAGAAAAAGAAGGCAGAGAGGTTGGCACGTGAAGCAGAAGAAAGGATACAAGTTTTGGAAAATGAGGAAGGGTCCTCACCTAGCTTTGCTGCCACAGTATATGCATCAAGGTTTGCATCAAGTGCATTGCGCCACTTGCGAAGTGGTAAACGCACCAGAGTGCCACAGACACAGAGATTGCTACCCCTCATGCCTCAGAAACCAGCTGAGCCAGATTTCACTGCTCAGAAAAACTAG 1569 0.4207 MLQVNINILTAFGSSLIMTAKGQKFVRFKDWKSLSSSSIEHDVSTSAGFNKRKLQSSMVILAMIPFPKCAVPYVGKDLLKYTIIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESRLRCWRRQLKNVMFFHESFLSCGGRGNPTVLSHLNSSCPFKDPQESEDLETFNFGMFIEALKYRVVENTTDFHHKFFYCFWWGLRSVSSVGQGLQTSTYVGEIIFAIFIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDILKERIRRYEQYKWQENRGVEEETLIHNLPKDLRRDIKQRSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSFEIKPGDFCGEELLTWALDPNSSTNLPISTRTVETISEVEAFALMPDDLKFYSLQWKTWGACFIQAAWRRYKKKKAERLAREAEERIQVLENEEGSSPSFAATVYASRFASSALRHLRSGKRTRVPQTQRLLPLMPQKPAEPDFTAQKN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0552 522 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 57 336 - -
Aed2g0552 522 SUPERFAMILY cAMP-binding domain-like 277 442 IPR018490 -
Aed2g0552 522 Coils Coil 446 466 - -
Aed2g0552 522 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 336 520 - -
Aed2g0552 522 Pfam Cyclic nucleotide-binding domain 332 421 IPR000595 -
Aed2g0552 522 Gene3D - 39 272 - -
Aed2g0552 522 SUPERFAMILY Voltage-gated potassium channels 87 314 - -
Aed2g0552 522 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 57 336 - -
Aed2g0552 522 ProSiteProfiles cAMP/cGMP binding motif profile. 338 397 IPR000595 -
Aed2g0552 522 Gene3D Jelly Rolls 320 430 IPR014710 -
Aed2g0552 522 CDD CAP_ED 322 417 IPR000595 -
Aed2g0552 522 MobiDBLite consensus disorder prediction 493 522 - -
Aed2g0552 522 Pfam Ion transport protein 57 276 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed2g0552 522 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 336 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0552 Aed-Chr2 3994179 3998798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0552 58 518 Ion Channels AT4G01010 55.662 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0552 K05391 - gmx:100795201 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0552 2 3994179 3998798 Aed2g0552 2 3994179 3998798 ECH
Aed2g2657 2 28758314 28767978 Aed2g0552 2 3994179 3998798 PCT