Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0280 ATGCAAGACCCAACAGCATTCCAATTAGGAGTGAAGCCACCACCCCAGTTTCCTGAACAAGAGCAACTCAAATGCCCTCGTTGTGACTCCATAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGCCACTTTTGCAAGAACTGCAGAAGGTACTGGACTAAAGGTGGTGCTTTGAGAAACATCCCTGTTGGAGGTGGAAGCAGAAAGGCCACAAAACGTTCATCATCAACCTCAAAACGCTCTTCTTCTTCCTCTGCGGTTTCGGATCCTGACCCGACCCGGATTTGCACCAACCCGGTTGATCAAGACCAGAGGGTGCTCAACATTGGTGGTAGCAGCTTCAGTTCTCTCTTGGCTTCATCTGGGCACTTTGGAACATTCTTGGAGGGTCTGAATCCAACTGGGTCAGGTCTCAAAATGGCTGATTTTGTAGAGGGGGTGAGTTCTGACCCGGGTCCAAACCCGGGTTTGCAGATTCAGAGCAATGGGAATTCAGAGAGCTTTCTAGGCATGCAGAATGGTGATTCAAGCTGTTGGAATGGTACTCATGGTTGGTCTGATCTTGCAATATACACACCTGCCCCAAGTTTTCAATAG 612 0.4853 MQDPTAFQLGVKPPPQFPEQEQLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKATKRSSSTSKRSSSSSAVSDPDPTRICTNPVDQDQRVLNIGGSSFSSLLASSGHFGTFLEGLNPTGSGLKMADFVEGVSSDPGPNPGLQIQSNGNSESFLGMQNGDSSCWNGTHGWSDLAIYTPAPSFQ 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0280 203 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 11 203 - -
Aed2g0280 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 203 IPR045174 GO:0003700|GO:0006355
Aed2g0280 203 ProSiteProfiles Zinc finger Dof-type profile. 23 77 IPR003851 GO:0003677|GO:0006355
Aed2g0280 203 MobiDBLite consensus disorder prediction 74 105 - -
Aed2g0280 203 Pfam Dof domain, zinc finger 21 77 IPR003851 GO:0003677|GO:0006355
Aed2g0280 203 MobiDBLite consensus disorder prediction 67 105 - -
Aed2g0280 203 ProSitePatterns Zinc finger Dof-type signature. 25 61 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0280 Aed-Chr2 1815836 1816447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0280 15 133 C2C2-Dof Transcription Factor Family AT1G51700 56.296 2.47e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed2g0280 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0280 - - gmx:100790822 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0280 2 1815836 1816447 Aed2g0280 2 1815836 1816447 ECH
Aed1g1383 1 12763856 12764491 Aed2g0280 2 1815836 1816447 PCT