Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2845 ATGAGTCAAATGACAAATGAGGTGGACAACAATGTGCACTGCGATGATCAGGCTGGGTCACAATTGAATGAGGGTAATGTAGTAGGTGTTGTTCTGAAGAAAGGGCCATGGACAACTGCTGAAGATGCTCTTTTGATGAACTATGTCCAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTACTCTGGCCTGTCTCGTTGCGGAAAAAGTTGTAGACTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGAGCATTTACCGCAGAAGAGGAGCGGATGATTGTTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGTGCACTTGCCTGGTCGTACAGATAACGAAATAAAAAACTATTGGAACACCCGGATGAAGAGGCGTCAACGGTCTGGCTTGCCACTTTATCCTCCTGAAGTACTTTTGCAATCATCATTTCAAGAGAGAAAGCATGGTCAAGGTACTGGTGAAATTAGTGATGGTGATGGAGGGCATCATGATTTCTTGAAGAAAAACAATAATGAGATACATGATGCTATATTTGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTTTGCCTGACCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGGTCTTGGTTCTCCACCATATTGTAATTTTTTGCCATCAACATTACCTACCCAGGATCATCTTCAAGACTCAACAATGTCTTTTATTGGTTATGGTGAATTGAACAGCAATGGGTTTTATCCATTTGACCATATTAAGGATAATACTTCTGATAAGATTGCAGAATCATTTGGATTGTATTCTCCGCTTGATCATGGTGCCTCCTCACATGGCTCAATTTGTTACAGCCATTCACTATCGAATGGCAATTCCTCTACTTCTAAGCTGAGTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAAATTCCAGATACCGAATTTGGAAGTTGGGGTACCTCTCCCCCACCTCCATTGATTGAGGCCGTTGATGTTTTCATTCACTCTCCTCAACCACCTAATGCACTAGACTCAGCTTCTTCTTCACCACTTAATAGTGGCTTGCTTGATGCATTGCTGTATCAGGCGAATACTCTTGGTTGTTCAAAGAATAATTCTTCTGACAAGAGTTCAAATTCTTCAATTGCAACTCCTCGTGACAGAGCTGAGAGTTCTGCTTTGAACATGTATGAGACAGAATGGGAGGATTATGCTGAACCTCTATCTCCCTTTGGAGCAACTTCAATCCTGAATGAACATCCTGTTGTTAGCACCAATGGAAACTCATGGGATGAATGGGAACCTTTTCAGACCTTTACCGGCAACAATGAGAAATTGCAGTCAGTTGACCCGGTTTGGGCCCTTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATCTCACTCTTCCTGATGTCTTGATAACTTCAGATTGGCACGAGCTGTATTCTGACCATGACAGCACAAACCAAGCCGTCATGACGGATGTCAGTGATGATATCAGTGGACAGTAA 1536 0.4297 MSQMTNEVDNNVHCDDQAGSQLNEGNVVGVVLKKGPWTTAEDALLMNYVQKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERMIVELHAKMGNKWARMAVHLPGRTDNEIKNYWNTRMKRRQRSGLPLYPPEVLLQSSFQERKHGQGTGEISDGDGGHHDFLKKNNNEIHDAIFDSLKENQGILPFLPDLPDISANSILPNGLGSPPYCNFLPSTLPTQDHLQDSTMSFIGYGELNSNGFYPFDHIKDNTSDKIAESFGLYSPLDHGASSHGSICYSHSLSNGNSSTSKLSSEAVKSELPSLQIPDTEFGSWGTSPPPPLIEAVDVFIHSPQPPNALDSASSSPLNSGLLDALLYQANTLGCSKNNSSDKSSNSSIATPRDRAESSALNMYETEWEDYAEPLSPFGATSILNEHPVVSTNGNSWDEWEPFQTFTGNNEKLQSVDPVWALKSENQSMSLLNLTLPDVLITSDWHELYSDHDSTNQAVMTDVSDDISGQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2845 511 MobiDBLite consensus disorder prediction 378 399 - -
Aed1g2845 511 SUPERFAMILY Homeodomain-like 33 128 IPR009057 -
Aed1g2845 511 MobiDBLite consensus disorder prediction 160 176 - -
Aed1g2845 511 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 504 - -
Aed1g2845 511 CDD SANT 36 81 IPR001005 -
Aed1g2845 511 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Aed1g2845 511 CDD SANT 89 130 IPR001005 -
Aed1g2845 511 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Aed1g2845 511 Gene3D - 33 86 - -
Aed1g2845 511 SMART sant 33 83 IPR001005 -
Aed1g2845 511 SMART sant 86 134 IPR001005 -
Aed1g2845 511 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 504 - -
Aed1g2845 511 ProSiteProfiles Myb-like domain profile. 32 81 IPR001005 -
Aed1g2845 511 MobiDBLite consensus disorder prediction 378 396 - -
Aed1g2845 511 MobiDBLite consensus disorder prediction 156 176 - -
Aed1g2845 511 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Aed1g2845 511 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Aed1g2845 511 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Aed1g2845 511 Gene3D - 89 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2845 Aed-Chr1 23665797 23670698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2845 31 508 MYB Transcription Factor Family AT3G11440 40.319 5.93e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g2845 Myb_DNA-binding 6.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2845 1 23665797 23670698 Aed4g1431 4 18824092 18828621 PCT