Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2840 ATGGAAGAAGGGTTAGGGCAAAACTCAGTTCCTCCTCATGGTCCCATTGATAAGTCCAGGATTCTGGATATTAAACCTCTGAGGAGTTTGATTCCTATTTACTCAATGTCTTCTCAAGCTCCACCTGCTGGCCAGTATCCTTCTGGATTTTCTCCATTTTTCCCATTTGGTGCACCTCAGCAAACTCCAGCTGGGGGGACAGCAAGGGGTGCTGCCACACCTGCTCCATTAAGGGCATATAGGAGCCCAATAGGGTCAACAATGGAGGGGTTCAATGGTCAAGATTCTTCTGGCAAGAAAAAGCGTGGATCACCGTCGTCGCGCCATGCCAAATCATTGGAGAATAAGCCTAAGAAAAGTCAAGAGCCACATGCTGATTTAGGTGGTTTAGTTGGTATTAGCCCCGCCCTAAGAGAAGATGGTAGCCGTGAAGTGGTTAATCTTGTCCTCATGGCGTTTGATGCGCTTCGAAGAAGGCTCTGCCAACTTGAAGAGGCCAAGGAGTTGAGCTCGGGTTCGATCAAGCGTGCGGATTTGAAAGCATGCAATACTTTGATGACCAGAGGGATTCGGACAAACACGAGGAAGAGAATAGGAACAGTTCCTGGGGTTGAGATTGGTGACATTTTCTTTTTCCGAATGGAATTGTGTGTCGTGGGTTTGCATGCTCCCTCCATGGGTGGAATTGACGCCTTGCATATCAGGGGTGAGTTTGAGGAGGAAACTCTAGCTGTGTGCATTGTTTCGTCAGGGGAATATGACGATGATGCCGAGGATAGTGATGTTTTAATTTATACCGGTCAGGGTGGGAATGTCTACATGAAGAAAGATAAGCATGTGACTGACCAAAAGCTTCATAGGGGTAATCTTGCTTTGGATAGGAGTTCGCGACAACACAATGAAATAAGAGTCATTCGGGGCATGAGAGATGGTGTAAATCCAAATAATAAAATCTATGTCTATGATGGTCTTTATAAAATCCAAGATTCATGGATGGAAAAAGCCAAAGGTGGCAGTGGTGTATTTAAGTATAAGTTGGTGAGAGTGCCTGGTCAATCTAGTGCCTTTGCTGTTTGGAAATCAATTCAGAAGTGGAAATCCGGCTCCCCTTCAAGGACTGGACTTATTCTTGTTGACCTTTCCAATGGAGCTGAGGAGGAGGATGATCTGAATGATGTTGAGAGCCAGATCCAGTTTAGAAGTGCAAGTTTAGTGGATGTAGTATTGGTTCCAAATCAAGTGTAA 1245 0.453 MEEGLGQNSVPPHGPIDKSRILDIKPLRSLIPIYSMSSQAPPAGQYPSGFSPFFPFGAPQQTPAGGTARGAATPAPLRAYRSPIGSTMEGFNGQDSSGKKKRGSPSSRHAKSLENKPKKSQEPHADLGGLVGISPALREDGSREVVNLVLMAFDALRRRLCQLEEAKELSSGSIKRADLKACNTLMTRGIRTNTRKRIGTVPGVEIGDIFFFRMELCVVGLHAPSMGGIDALHIRGEFEEETLAVCIVSSGEYDDDAEDSDVLIYTGQGGNVYMKKDKHVTDQKLHRGNLALDRSSRQHNEIRVIRGMRDGVNPNNKIYVYDGLYKIQDSWMEKAKGGSGVFKYKLVRVPGQSSAFAVWKSIQKWKSGSPSRTGLILVDLSNGAEEEDDLNDVESQIQFRSASLVDVVLVPNQV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2840 414 SUPERFAMILY PUA domain-like 181 369 IPR015947 -
Aed1g2840 414 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 387 - -
Aed1g2840 414 SMART G9a_1 194 352 IPR003105 -
Aed1g2840 414 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 387 - -
Aed1g2840 414 Coils Coil 410 414 - -
Aed1g2840 414 Gene3D - 181 367 IPR036987 -
Aed1g2840 414 ProSiteProfiles YDG domain profile. 199 348 IPR003105 -
Aed1g2840 414 Pfam SAD/SRA domain 198 352 IPR003105 -
Aed1g2840 414 MobiDBLite consensus disorder prediction 40 129 - -
Aed1g2840 414 MobiDBLite consensus disorder prediction 107 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2840 Aed-Chr1 23610691 23614826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2840 17 385 Su(var)3-9 homologs AT5G04940 49.751 2.32e-112 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2840 1 23610691 23614826 Aed4g1423 4 18666465 18671310 PCT