Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2832 ATGAAAACAATGTCATCCCCACCATTTTCCCTTCTCTTCATTCTCTTCCTCTTAGCACCATTACTCTTAGCTCAATCTCCACCATCTCCACCTTCTTCTGCTGCCGCCACCTGCAAAGGCACACTATATCCAAAGCTATGCCGCTCCATTCTCTCCGCCATTCGCTCCTCCCCTTCCGACCCCTACGGATACGGCAAGTTCTCCATAAAACAAAGCCTCAAGCAAGCTCGAAAACTCGCCAAAGTGTTCGAGGACTTCCTCAAACGCCACCAATCATCGCCATCCCTCAACCACGGCGAGATCGCATCGCTCGGCGACTGCAGAGACCTGAACAGGCTCAACGTCGACTACCTGTCCTCCGTCTCCGAGGAACTCAAGTCTGCTTATGATGTAATTAACTCATTGTTACCGGACTCGGCCGAACTCGTCGAGAAGATCGAGAGCTACCTCAGCGCCGTCGCGACCAACCACTACACATGTTATGACGGATTGGTCGCGACGAAAAGTGGCATTGCGAATGCACTCGCCGTGCCGCTCAAGGATGGAACACAGCTTTATAGTGTGTCACTTGGATTGGTGACTCAGGCTCTTGACAAGAACCTCAGGAGGAGCAATAAGACACGGAAGCATGGACTGCCCACCAGGAACTTCAAGGTTAGGCAACCACTGGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGTGCCAAATTATCCAATTGTACTAGAACTGGGAGGATTCTTAAAGAAAGTGGAAGCCAAGGAATTTTATTGCATGACTTTGTGATTGTGAGCCATTATGGGATTGACAACTACACCTCCATTGGAGAGGCTATTGCTGCTGCACCCAACGACACAAAGCCTGAAGATGGATATTTCCTTGTGTATGTTAGGGAGGGATACTATGAAGAATATGTAGTTATTCCCAAAGAAAAGAAGAATATATTGCTAGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAACCATAGTGTCATAGATGCTGTTTCTGGAGAAAGATTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGAGCTGAAAAGCACCAAGCAGTGGCAGTGAGGAACAACGCTGACCTCTCCACATTCTACAGATGCAGCTTTGAAGGATACCAAGACACACTCTATGCTCACTCCTTGAGGCAGTTCTACCGAGAATGTGATATCTATGGCACTGTTGACTTCATATTTGGCAACGCCGCAGTGGTCTTCCAAGGCTGTAAAATCTACGCCAGAAAGCCACTGCCGAATCAGAAGAATGCCGTGACAGCACAGGGAAGGACTGATCCGAATCAGAACACCGGCATCTCAATCCAGAACTGCACCGTCGATGCTGCACCGGACTTGGCGGCGGACTTGAACTCGACGATGAGCTTCTTAGGCCGGCCGTGGAAGGTGTATTCGAGGACTGTCTATCTGCAGTCATACATTGGAGATGTGATTCAACCTGCTGGATGGTTGGAGTGGAATGGAACAGTTGGATTAGACACTCTTTTTTATGGCGAGTTTAACAACTATGGACCTGGTTCTAACACTAGCAATAGAGTGCAATGGCCTGGTTACTCTCTCTTGAATGCTACTCAAGCTTGGAACTTCACAGTTCTTAATTTTACATTGGGAAACACTTGGCTTCCTGACACCGATATACCTTACACCGAAGGACTACTGAGATAG 1704 0.4765 MKTMSSPPFSLLFILFLLAPLLLAQSPPSPPSSAAATCKGTLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQARKLAKVFEDFLKRHQSSPSLNHGEIASLGDCRDLNRLNVDYLSSVSEELKSAYDVINSLLPDSAELVEKIESYLSAVATNHYTCYDGLVATKSGIANALAVPLKDGTQLYSVSLGLVTQALDKNLRRSNKTRKHGLPTRNFKVRQPLEKLIKLLRTKYSCAKLSNCTRTGRILKESGSQGILLHDFVIVSHYGIDNYTSIGEAIAAAPNDTKPEDGYFLVYVREGYYEEYVVIPKEKKNILLVGDGINKTIITGNHSVIDAVSGERFIAVDVTFRNTAGAEKHQAVAVRNNADLSTFYRCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVFQGCKIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTVDAAPDLAADLNSTMSFLGRPWKVYSRTVYLQSYIGDVIQPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVQWPGYSLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2832 567 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Aed1g2832 567 SMART PMEI_2 29 192 IPR006501 GO:0004857
Aed1g2832 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 196 IPR035513 -
Aed1g2832 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 195 IPR035513 -
Aed1g2832 567 Gene3D - 261 567 IPR012334 -
Aed1g2832 567 CDD PMEI-like_3 38 194 - -
Aed1g2832 567 Pfam Pectinesterase 263 550 IPR000070 GO:0030599|GO:0042545
Aed1g2832 567 Pfam Plant invertase/pectin methylesterase inhibitor 35 191 IPR006501 GO:0004857
Aed1g2832 567 PANTHER PECTINESTERASE 10 565 - -
Aed1g2832 567 SUPERFAMILY Pectin lyase-like 261 564 IPR011050 -
Aed1g2832 567 PANTHER PECTINESTERASE 10 565 - -
Aed1g2832 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 170 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2832 Aed-Chr1 23530247 23535898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2832 38 566 Carbohydrate Esterase AT3G10720 61.142 0.0 686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2832 1 23530247 23535898 Aed4g1412 4 18530336 18535189 PCT