Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2831 ATGGATATAGATCTTCGGTTACCTTCTGGTGAACATGATAAGGAGGAAGAAGAAACAACTACAATTGATAACATGTTGGGCAGTGAAGAAAAATTGCATAATGGAGATATAGATGGCAGAAATATAGTTGATGCTGGTATGGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACTAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCACAGTGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCAACGGGATTTAACACTGCAATACAAAATAGCCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGTTCCCGATATGGAACAAAACGAGAGTATGACAAATCATTTAATCGACCACGTGCACGACAGAACAAACAAGATTCTGAAAATTCAACTGGTCGAAGATCCTGTTCAAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTTGTGAAGGAACATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGACGAATGTATGCTGCGATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGAAGCAAAAGCAGATTCGGATACATGGAATAAAGTGGCAACCTTAAAAACTCCTTCTCCTTTGGAGAAGAGTGTTGCAGGGATTTTCACTCATGCTGTATTCAAGAAGATTCAAGCTGAGGTTGTAGGTGCAGTTGCTTGTCATCCTAAAGCTGACAGGCATGATGATACAACCATTGTTCACAGGGTTCATGATATGGAAACAAATAAAGACTTCTTTGTTGTGCGAGCACTAAAACTTAGTGAAGAGGGATCATTGTCTCAAGAAAGTTATAGTATTGCATTCCATGCACTACATGATGCACACAAAAGTTGTGTGAGTGTTAACAATTCTAGTAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCACCGAAGAAGATACCCAAAGTAGAAGTATGGGCAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATGACAGTTGGGGCACTAGACAACTTGCAACAAATGGAAAAATTCAGCACAAGAGCTGCAGTAACTCTTGAAGGTTATTATGGTGCACAGCAGAGCGTGCAAGGGATGTTGAACTTAATGGGACCAACCCGTGATGATTACTACGGGAATCAACAGACACTTCAGGGGCTGGGACCAATAAGTTCGATACCAACCAGTCACGATGGTTATTATGGCACACATCAGGGGATGCCGGGTCTGGTAAGGTTCACTAAATCTAAGGATAATTTTCTGTTCCTCGTAATGTTTGATGAATTCTTATACGGTCCAAACATGCAGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATGGCATTCGGGCTGGTGAATCAAGAGCTATAAGCTGA 1515 0.4033 MDIDLRLPSGEHDKEEEETTTIDNMLGSEEKLHNGDIDGRNIVDAGMEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHSEAYSFYQEYARSTGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVEAKADSDTWNKVATLKTPSPLEKSVAGIFTHAVFKKIQAEVVGAVACHPKADRHDDTTIVHRVHDMETNKDFFVVRALKLSEEGSLSQESYSIAFHALHDAHKSCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRSMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVTLEGYYGAQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGTHQGMPGLVRFTKSKDNFLFLVMFDEFLYGPNMQAQLDFLRTGFTYGIRAGESRAIS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2831 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 217 IPR031052 GO:0006355
Aed1g2831 504 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 45 217 - -
Aed1g2831 504 MobiDBLite consensus disorder prediction 322 351 - -
Aed1g2831 504 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Aed1g2831 504 MobiDBLite consensus disorder prediction 132 164 - -
Aed1g2831 504 MobiDBLite consensus disorder prediction 322 371 - -
Aed1g2831 504 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 293 424 - -
Aed1g2831 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 293 424 IPR031052 GO:0006355
Aed1g2831 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 217 290 IPR031052 GO:0006355
Aed1g2831 504 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 217 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2831 Aed-Chr1 23504855 23511358 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed1g2831 FAR1 2.8e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2831 1 23504855 23511358 Aed4g1387 4 18097684 18105503 PCT