Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2159 ATGCAGATGTTCTCTTCCACATATGACTCCAATCTTTTCCCTAACTTCCCATCGTCTTCTTACCCTATACTTCCTTTTCTCATTGATCCTGAGAATGATTTTGCAAGCAACACCCTTCTCGATGACCCTCTTGTTGTTCCCCTCATACCCACCACCACACATGATCATCAAGCTCCATTCCCTGAAGAAACAAATTTTGCAGTTGCTCATGACTGCACTACTGTCGCCATGCTTGAACAGGATGCAAAAAACACTAACTATGGTTCCCACTACGGTAATAGCAATTCCAATTTCCTCACCCAGAAGCCAGCCACAGCCAAAAAAGACAGACACAGCAAGATTCACACATCTCAGGGCTTGAGGGACCGGAGGGTGAGATTATCAAGCGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTAACAAACCAAGTAACACACTTGAGTGGCTCTTCACAAAGTCTGACAATGCAATCAAAGAACTAGCCCGGAGTAAGCATAGCAGCAGTAACGGCGGCAGTGGCGGTGGTGACAAGTGTTCCGCCGACCCTTCTGTGGATTCAAATAACAACAAATCATTGGTGGGTAATAAAGGGAGGAAGTTGAAATGGGCACAGAGGGATAACGATGTCTGTGTTCAGAACAAAAGAGAGTCAAGGGAAAGGGCAAGAGCAAGAGCAAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTAGAAGGGTGGTGCAGAAGGATCAGTTTGATGATCAACAATGGTGCCCTGCAACAACAAACACTACTACTCAAATGCTGCACCAATTCAGGTCTTCCTCCATTCATCAGCCACCTGAACCTCAACCTTGTGCAAGATGGGTTCAGCCAGCTTATAATAACAACCCTTTTCTCATTCATAATAATGAAGCACCCAGAGATGGATTTGACGTCATTGAAGAATCTATTATGATAAAAAGGAACAATAAGCCGTCATCTCATCACCACCAAAACCTTGTGATCCCTAGGGATGCAAGTTTCAACTACAATGACTGCCCCCTATTACCCTATTCCACTCCAAACACCTGGGATACTAACTTTTGTGGAATAAGCACCATGAATCTATCTACATGTTTCATGAACCCGTGA 1128 0.4415 MQMFSSTYDSNLFPNFPSSSYPILPFLIDPENDFASNTLLDDPLVVPLIPTTTHDHQAPFPEETNFAVAHDCTTVAMLEQDAKNTNYGSHYGNSNSNFLTQKPATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFNKPSNTLEWLFTKSDNAIKELARSKHSSSNGGSGGGDKCSADPSVDSNNNKSLVGNKGRKLKWAQRDNDVCVQNKRESRERARARARERTCYKMCSSRRVVQKDQFDDQQWCPATTNTTTQMLHQFRSSSIHQPPEPQPCARWVQPAYNNNPFLIHNNEAPRDGFDVIEESIMIKRNNKPSSHHHQNLVIPRDASFNYNDCPLLPYSTPNTWDTNFCGISTMNLSTCFMNP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2159 375 MobiDBLite consensus disorder prediction 104 121 - -
Aed1g2159 375 ProSiteProfiles R domain profile. 220 237 IPR017888 -
Aed1g2159 375 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 371 - -
Aed1g2159 375 MobiDBLite consensus disorder prediction 166 202 - -
Aed1g2159 375 ProSiteProfiles TCP domain profile. 107 165 IPR017887 -
Aed1g2159 375 MobiDBLite consensus disorder prediction 93 121 - -
Aed1g2159 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 371 IPR005333 GO:0003700
Aed1g2159 375 Pfam TCP family transcription factor 105 240 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2159 Aed-Chr1 18017406 18019518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2159 105 360 TCP Transcription Factor Family AT1G67260 30.325 2.98e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aed1g2159 TCP 4.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2159 - - aprc:113871835 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2159 1 18017406 18019518 Aed7g0488 7 3492160 3494054 PCT