Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1949 ATGGACAGAACATTGTTTCTCCTGAAACTGTTGTTCTCTTTGGTGGTTCTCTTAGGATGCTCTTCGGCTTCAGACCATTTGGTTAATGTATCAAAGTTGGAGATGTTCGTTGATGAACTTCCCGACATCCCCAGAATCCTTGCTTATCATCTTTTAGATGGCGTCCCAAAATCGAAGTCTTTCAAGATTGGCATGTTCAAGAAGAAATGGAAATTCCACAGGGATCTGCCTCCAGCCACAGTGTACGCTTATGGAAGAAGCAAACACACAGCAACAGTTCCTGGTCCAACGATCGAGGCCCTCTATGGCGTTGGCACGCACGTGAGGTGGCAAAATCACCTCCCTCCAAACCACATACTTCCTTGGGACCCCACCATCCCCACCGCAATGACCAATTCCACACGTGGCATCCCCACAGTGGTCCACCTCCACGGTGGAATCCACGCGCCAGAGAGCGACGGAAACGCCAATGCATGGTTCATATCAAATTTCAACGAAAGGGGACCCACGTGGACCAAGAAGACATATCACTATCCCAATAATCAACAACCGGGGAACCTATGGTACCACGACCATGCCATGGGGTTGACCCGAGTCAACCTTCTTGCTGGCTTACTTGGTGCCTACATCATTCGCCACCCTCAGATCGAGGATCCGCTAGGATTACCCAGCGGTCACGAATTCGATCGAACGCTCGTCGTTTTCGATCGTAGCTTCCGCAAGGACGGTTCGATCTTCATGAGTTCCATTGGGAACAACCCTTCTATACACCCTCAGTGGCAGCCTGAGTACTTCGGTGACGCTATAATTGTGAACGGCAAAGCGTGGCCGCGCCTAACTGTACGACGTCGTAAGTATCGATTCCGCATAATCAACGCCAGCAACGCTAGGTTCTTCAGATTCTTCTTCACCAACGGGTTGAGATTCACCCACGTGGCATCCGATTCGGCTTATATCGAAAAGCCCGTGAATGCCAATGATTCACTGGTGGGGCCATCTGAGATCACAGACATCGTTGTTGACTTTTCTCAGTCCAAGAGTAACGTCGCTATTCTAGCTAACGACGCGAAATATCCTTACCCTTCTGGTGATCCCGTGAATAAGGATACCAACGGCAAGGTTATGAAGTTTATCATCCTGCCAGATCGACAAGTTGACACGTCACGGATCCCTAAACAGTTGATACAATACCCTGCTGCGGATTTATCCAGTGTGACGCACACACGGTATGTTGCTATGTATGAGTACGCAAGCGACATTGATGAGCCAACCCACTTGTACCTAAATGCGAAGCCGTATGATGCACCGGCTACGGAGACCCCGAAGGAGGGGTCCACAGAGTTGTGGTATGTGATAAACTTGACGGAGGATAATCACCCGCTTCACATTCATTTGGGGTTGTTCAAGGTGTTGGAACAGACGGAGCTGGTGAAACCGGATGAATTCAAGGAGTGTATGACGAAAATAAACGACGCGGTGAAGTGCCACGTGGAGAAGTACGCGCGTGGAAAGAAAAAAGAGGTGCCAGGTCATGAGAAAGGGTGGAAGAATGTGTTCAAGATGATACCTGGGTATGTGACGAGGGTTGCGGTTAGGTTTTCTTACATACACACCAACGCATCATATGCGTTTGATCCAACCACAGACCCTGGCTACGTCTATCATTGTCATGTATTGGACCATGAAGACAATGCTATGATGAGACCCTTGAAACAATTCAGCATCGCTCCTAAATTCAACGACTCCGTTCCGTTCTCTTTCTTCTTCTTCCTCCTCGAAACCCTAATCAGCTTCTTCACTGCTTCTGCACTTCCTTCTGATTCCACTTTTGTGCCGGCCAATGTGTCTAATTTACATCCTATTAAAGATCCGTTGAATTCACCTCCTGCTGAAGAGACTGAAGGACAAGCTTCTGCTGCAGTAGTCTCTGGACAAGATAATTCTCCACATGAGGCATCATCTAGTCTATCTCCCACAGGCATATCATCCTGGGCCAAAAACTTGAAAATCTCTCAGTCATTTTCTGGCTCCCAAGACGACTCATCAAGTGGAAATGTTGGGAAATCAACTTTTGCACGCATCACAAGTAATTTGGGATTGAGGTTGTCTCCAAAGTCTCCTGAAGCAGATGACAGTTCCAATGAAACAGCTGGACAATCTAATTTGTTTGGAACTATTACGAAAGGCCTGGTTGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTCAAGGCACGCCATGTTGTTTCACAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGGTTTTTCGGCTATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAAACTCAGCATAAGGGTAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGTTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATGCCATTCTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGGTTGATGATTTCAAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGCGAAAATCCACCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCTATAACTGTCTCAGATCACAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTTAGTGCGCCAAAAAAGGGAGTGATGGTCTTTGCTTTGCCAGGAGAGCCTGGTCTTACAGAGTTGGCTGGGGATTTCAAAATCCAATTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTATTGAACACCAGTGATCTGGATGGCTTTGACAAGAGAAAATTGCCTTCTCCGGGATTTATGGTGGAGATTGTGCTCGTGGATAATAATGGCAATGTTGTAACTTCTAAAACTGAAACTACCACAAAGAAATCAGATGAGAGTTCAAGTAACAGTCTTGCCAGTCCCACCCCAGTGGAAAGGAGCACCCCTGCACAGAATGCAGACAAAGAATCAGACAGTCATGATAAAGATGATGTGTTTTCAGATGGCGAGGCAGAGCAATCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTACAAATGACACCAGAGTCTCCGAATCAAACAGAGTTTCAAATCAAATTGCAAATTTATCACATGCAACAGAGAAAGTTTCCCTGGGAAACAAGAGCTCTACACCAATTCATCATGCTGGTGAGCCAAGAAGTAACGTTGAGAGGAAAACAGGGTCCAATATCGAGGTGTCTGGGGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACATTTGGAGATGATGAAGACTACGAAAGCGATTGA 3690 0.4534 MDRTLFLLKLLFSLVVLLGCSSASDHLVNVSKLEMFVDELPDIPRILAYHLLDGVPKSKSFKIGMFKKKWKFHRDLPPATVYAYGRSKHTATVPGPTIEALYGVGTHVRWQNHLPPNHILPWDPTIPTAMTNSTRGIPTVVHLHGGIHAPESDGNANAWFISNFNERGPTWTKKTYHYPNNQQPGNLWYHDHAMGLTRVNLLAGLLGAYIIRHPQIEDPLGLPSGHEFDRTLVVFDRSFRKDGSIFMSSIGNNPSIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFRFFFTNGLRFTHVASDSAYIEKPVNANDSLVGPSEITDIVVDFSQSKSNVAILANDAKYPYPSGDPVNKDTNGKVMKFIILPDRQVDTSRIPKQLIQYPAADLSSVTHTRYVAMYEYASDIDEPTHLYLNAKPYDAPATETPKEGSTELWYVINLTEDNHPLHIHLGLFKVLEQTELVKPDEFKECMTKINDAVKCHVEKYARGKKKEVPGHEKGWKNVFKMIPGYVTRVAVRFSYIHTNASYAFDPTTDPGYVYHCHVLDHEDNAMMRPLKQFSIAPKFNDSVPFSFFFFLLETLISFFTASALPSDSTFVPANVSNLHPIKDPLNSPPAEETEGQASAAVVSGQDNSPHEASSSLSPTGISSWAKNLKISQSFSGSQDDSSSGNVGKSTFARITSNLGLRLSPKSPEADDSSNETAGQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETQHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIMPFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIQFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFMVEIVLVDNNGNVVTSKTETTTKKSDESSSNSLASPTPVERSTPAQNADKESDSHDKDDVFSDGEAEQSASSRSKQTKAPSEAVETVTNDTRVSESNRVSNQIANLSHATEKVSLGNKSSTPIHHAGEPRSNVERKTGSNIEVSGAESEFKAMAADASVFTFGDDEDYESD 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1949 1229 Pfam Multicopper oxidase 129 215 IPR011707 GO:0005507
Aed1g1949 1229 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 624 1229 - -
Aed1g1949 1229 CDD PTP_PTEN 764 928 IPR045101 GO:0016791
Aed1g1949 1229 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 767 935 IPR029021 -
Aed1g1949 1229 MobiDBLite consensus disorder prediction 1074 1195 - -
Aed1g1949 1229 Pfam Multicopper oxidase 267 354 IPR001117 -
Aed1g1949 1229 CDD CuRO_1_BOD_CotA_like 63 214 - -
Aed1g1949 1229 Gene3D Protein tyrosine phosphatase superfamily 739 936 IPR029021 -
Aed1g1949 1229 SUPERFAMILY Cupredoxins 227 345 IPR008972 -
Aed1g1949 1229 Gene3D - 215 395 IPR008972 -
Aed1g1949 1229 CDD CuRO_2_CotA_like 228 379 - -
Aed1g1949 1229 ProSitePatterns Tyrosine specific protein phosphatases active site. 870 880 IPR016130 GO:0016311|GO:0016791
Aed1g1949 1229 Gene3D - 31 211 IPR008972 -
Aed1g1949 1229 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 624 1229 - -
Aed1g1949 1229 MobiDBLite consensus disorder prediction 1123 1184 - -
Aed1g1949 1229 MobiDBLite consensus disorder prediction 1074 1103 - -
Aed1g1949 1229 MobiDBLite consensus disorder prediction 622 659 - -
Aed1g1949 1229 MobiDBLite consensus disorder prediction 1104 1122 - -
Aed1g1949 1229 MobiDBLite consensus disorder prediction 701 720 - -
Aed1g1949 1229 ProSitePatterns Multicopper oxidases signature 2. 555 566 IPR002355 GO:0005507
Aed1g1949 1229 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Aed1g1949 1229 Gene3D - 396 573 IPR008972 -
Aed1g1949 1229 SUPERFAMILY Cupredoxins 35 216 IPR008972 -
Aed1g1949 1229 SMART PTEN_C2_2 938 1066 IPR014020 -
Aed1g1949 1229 Pfam Multicopper oxidase 429 570 IPR011706 GO:0005507|GO:0016491
Aed1g1949 1229 ProSiteProfiles C2 tensin-type domain profile. 940 1067 IPR014020 -
Aed1g1949 1229 CDD CuRO_3_CotA_like 406 571 - -
Aed1g1949 1229 SUPERFAMILY Cupredoxins 399 570 IPR008972 -
Aed1g1949 1229 MobiDBLite consensus disorder prediction 638 659 - -
Aed1g1949 1229 ProSiteProfiles Phosphatase tensin-type domain profile. 754 933 IPR029023 -
Aed1g1949 1229 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 868 907 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1949 Aed-Chr1 16599388 16610363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1949 640 1229 Protein tyrosine phosphatase (PTP) family AT3G19420 69.682 0.0 860
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1949 1 16599388 16610363 Aed1g1949 1 16599388 16610363 ECH