Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1942 ATGCATGTCCCGAACCAGTGTTTCATGGCACTCTTCCGATCATCATCCAAAATATTCACCACCCACACACACACTCTCCTTCCCCTCACAAAAACAAAATCACTTTCGCCAGCTTCAAATTTCGAACAACGTCAAATCACCCAAACCCCCAATGGGCCTCCAAAAACCCGCACATTCGCCTTCCACACGGCCCAACCTCGGCCCACCCCCGACGCCGAAACAATCTGCAGAATCCTATCCAACACCCGCGGTTCCACCGTCGACACCTCTCTCGTCGCCGTTCCGGCCAAGCCCTCGCCGGAGCTCGTCCTCGAGGTCCTGAAGAAACTCAGCAACGCCGGCATCCTCGCGCTCTCGTTCTTCCGTTGGGCGGAGAAGCAAAGCGAGTTCAAACACACCACAGAGACCTTCCACGCGTTGATCGAAGCACTGGGTAAGATCAGACAGTTCAAGATGATTTGGACTCTGGTCAACGACATGAAGCAGCGAAAGTTGCTTGCTTCTGACACTTTTGCCCTCGTTGCTCGAAGGTACGCAAGAGCAGGGAAAGACAAGGAAGCAATCGAGACGTTCGAGAAGATGGAGCACTACAGTTTGAAGCCGCAGGTGTCGGATTTTAATAAGTTGATCGATGTTTTATGTAAATCCAAGTGTGTAGAGAAGGCACACGAGGTGTTTGATAAAATGCGGCACTTAAGGTTGGACCCAGATATCAAGTCCTACACCATCTTATTGGAAGGGTGGAGTCAGCAGCAGAACTTGATTAAAGTCAATGAGGTGTGTAGGGAGATGGAGGATAAAGGGTTTCAGCTTGATGTTGTTGCGTATGGGATAATCATGAATGCGTATTGCAAGGCTAAGAAATTTGATGAAGCCATTGGGTTGTACCATAAGATGAAAGCTAAGGGTGTGAGTCCTAGTCCCCATGTGTATTGCACTTTGATTAATGGTTTGGGTTCTGATAAAAGATTGGACGAAGCTCTTGAGTTTTTTGAGGTATCGAAGGCTAGTGGTTTTGCACCGGAGGCTCCCACTTACAATGCTGTTGTTGGGGCTTACTGCTGGTCTTTGCGGATGGATGGTGCGTTTAAGATGGTTGGTGAGATGAAGAAGTGTGGGATTGGTCCGAATTCTCGAACGTTTGATATTATACTTCATCATCTGGTGAAGGGTTGTAGGATTGAAGAGGCTTGGTCGGTTTTCCAGAGGATGAGCGGTGGCGAGTTTGGGTGTGAGCCAAGTGTGAGCACGTATGAGATCATGGTGAGGATGTTTTGTAACGAAGAGCGGTTGGATATGGCAGTGGCGGTTTGGGATAAGATGAAAGGGAAGGGAATTCTTCCTGGAATGCACATGTTCTCCACGTTGGTCTGTGCCTTGTGCCATGAAAGTAAGTTGGGTGAAGCGTGTAAGTACTTTCAAGAAATGTTGGATGTGGGCATTCGACCTCCAGCCAAAATGTTTAGTACCTTGAAGGAAGCTCTAGTTGATGCTGGGATGGAGCCTATGGCCATGCATTTCGCTTTGAAAATTGATCAACTCAGGAAATCTCCATTAGTTGCTTGA 1566 0.4815 MHVPNQCFMALFRSSSKIFTTHTHTLLPLTKTKSLSPASNFEQRQITQTPNGPPKTRTFAFHTAQPRPTPDAETICRILSNTRGSTVDTSLVAVPAKPSPELVLEVLKKLSNAGILALSFFRWAEKQSEFKHTTETFHALIEALGKIRQFKMIWTLVNDMKQRKLLASDTFALVARRYARAGKDKEAIETFEKMEHYSLKPQVSDFNKLIDVLCKSKCVEKAHEVFDKMRHLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAYCKAKKFDEAIGLYHKMKAKGVSPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFAPEAPTYNAVVGAYCWSLRMDGAFKMVGEMKKCGIGPNSRTFDIILHHLVKGCRIEEAWSVFQRMSGGEFGCEPSVSTYEIMVRMFCNEERLDMAVAVWDKMKGKGILPGMHMFSTLVCALCHESKLGEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEPMAMHFALKIDQLRKSPLVA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 206 237 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 452 483 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 310 341 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 417 448 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Aed1g1942 521 TIGRFAM PPR: pentatricopeptide repeat domain 240 273 IPR002885 -
Aed1g1942 521 Gene3D Tetratricopeptide repeat domain 96 267 IPR011990 GO:0005515
Aed1g1942 521 Pfam PPR repeat family 413 462 IPR002885 -
Aed1g1942 521 Pfam PPR repeat family 203 247 IPR002885 -
Aed1g1942 521 Pfam PPR repeat family 272 318 IPR002885 -
Aed1g1942 521 Pfam PPR repeat family 345 390 IPR002885 -
Aed1g1942 521 Pfam PPR repeat 136 164 IPR002885 -
Aed1g1942 521 Pfam PPR repeat 176 195 IPR002885 -
Aed1g1942 521 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 518 - -
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Aed1g1942 521 SUPERFAMILY HCP-like 180 338 - -
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Aed1g1942 521 PANTHER OS01G0505500 PROTEIN 69 518 - -
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Aed1g1942 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Aed1g1942 521 Gene3D Tetratricopeptide repeat domain 390 518 IPR011990 GO:0005515
Aed1g1942 521 Gene3D Tetratricopeptide repeat domain 283 389 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1942 Aed-Chr1 16554676 16556241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1942 29 499 Glycosyltransferase AT1G05670 24.494 9.54e-36 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1942 1 16554676 16556241 Aed1g1942 1 16554676 16556241 ECH