Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1939 ATGGCGGGTTCTGGCGGGAAAAAGGTGCACCAAATGATAGTCGGTTTCGGCGGCAGCGGCCTCGGCCAAGTCGTCATCGCCGTCGCCGTCTCCTTCCTCGTCCGCGTCTTCTCCGCTCCCGGCCCCGCCCTCTCGCCGGAGAACGACGCCGATGACGTGCCGGAGAACGATTCCAACCACTCTGAAGCTCGGCCCGCCGGCAAGGTCACGCCGGTCACAATCCGGTGGAGAAACATCAATTGCTCCCTTTTCGATAAATCCTCCAAGTCCGTGAGGTTTCTGCTTAAAAATGTGAGTGGTGGAGCTAAGCCTGGAAGATTATTAGCATTAATGGGACCTTCAGGTTCAGGGAAGACGACGTTGCTTAATGTTCTTGCAGGTCAGCTCACAGCATCCCCTCGGTTGCATTTGAGTGGTGTTTTGGAGTTCAATGGAAAGCCCGGTTCCAAGAATGCTTACAAGTTTGCATATGTGAGACAGGAGGATCTCTTTTTCTCGCAGCTCACTGTGCGGGAGACGTTGTCTCTTGCTACTGAACTCCAGCTTCCCAACATATCTTCTGCCGAAGAGAGGGATGAATTCGTGGTCAATCTCCTTTTCAAAACAGGCTTGGTGAGATTTCTTTGTATCCCAGAACTTGTGTTTGTGGCCAAGCAGTTACTGCTATCCTATGTTACTGACACTCCGTTTGGCATTTGTATGCTTTTTCTTCTAAAGGTTAGTTGTGCTGATACCAATGTCGGTGATGCAAAAGTTCGTGGAATTAGTGGTGGTGAAAAGAAACGCTTATCCTTGGCATGTGAACTGCTTGCAAGCCCATCTGTTATATTTGCTGATGAACCCACAACAGGACTCGATGCTTTCCAGGCTGAGAAAGTCATGGAAACTCTCCAACAACTTGCACAAGATGGTCATACTGTAATTTGTTCTATACATCAGCCAAGAGGTTCAGTGTATAGTAAATTTGACGACATCATCTTGCTAACAGAGGGTTCACTTGTTTATGCTGGTCCTGCTCGTGATGAACCACTGGCATACTTCTCAAAATTTGGGTACCTGTGCCCAGCTCATACAAATCCTGCTGAATTTTTGGCTGATCTTATATCCATAGACTATGGTTCTGCTGATAGTGTCTATACCTCTCAAAAAAGGATTGATGGTCTTGTTGAGTCATTTTCACAAAGACAAGCTGCAGTTATATATGCAACTCCAATTACTATGAACGGTAGAAAGAAAATCAGCCAGAGGGCAGCAGTACAGAAGAAAGGAGTTTGGTGGAAGCAATTTTGGTTGCTCCTTAAAAGAGCATGGATGCAGGCTTCTCGTGATGCACCAACAAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCAGTATTTTGGAGGATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTACTGCAATAAACACAGCTATGGCTGCTCTCACAAAGACTGTAGGTGTGTTTCCAAAGGAACGGGCAATTGTAGATAGAGAACGTGCTAAAGGCTCCTATTCCTTGGGTCCCTATCTGTTCTCAAAATTGTTGGCTGAGATTCCCATTGGGGCAGCATTTCCATTAATGTTTGGTACTGTTTTGTATCCAATGGCACGTCTTCATCCTACTTTGCAGAGATTTGGGAAATTCTGTGGCATTGTCACTATGGAATCTTTTGCTGCATCTGCTATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTCATGACAGTATTTATTGTATTTGGAGGCTACTATGTCAATCCTGAGAATACCCCAATCATCTTCCGCTGGATTCCTAATGTTTCTCTGATTAGATGGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTAAATTTGACCATCAACATTCATTTGATATCCAAACTGGAGAACAGGCACTAGAGCGTATTTCCTTTGGAAAAAGTAGGATTAGGGATACGGTGATTGCACAAAATAGAATACTGCTATTTTGGTATTGCACCACCTACCTTCTCCTGGAGAAAAACAAGCCCAAATACCAGCAACTTGAAAGCCCTATTGACCACAACAAATCGCATTTAAAAATTGAGGAGCTCAATTCTGAAGAAGTTGATCAGAGTCAAACACTTGAAGCTCCGCCACCGCCAGTCAGCCAAGTTGATTCCAACCAGCCTCTTGCGTCACCTAAAGCAGATTTTGTTGGCCCTTTTATCCTCGAAGGTTTGTAA 2280 0.4518 MAGSGGKKVHQMIVGFGGSGLGQVVIAVAVSFLVRVFSAPGPALSPENDADDVPENDSNHSEARPAGKVTPVTIRWRNINCSLFDKSSKSVRFLLKNVSGGAKPGRLLALMGPSGSGKTTLLNVLAGQLTASPRLHLSGVLEFNGKPGSKNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPNISSAEERDEFVVNLLFKTGLVRFLCIPELVFVAKQLLLSYVTDTPFGICMLFLLKVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYSKFDDIILLTEGSLVYAGPARDEPLAYFSKFGYLCPAHTNPAEFLADLISIDYGSADSVYTSQKRIDGLVESFSQRQAAVIYATPITMNGRKKISQRAAVQKKGVWWKQFWLLLKRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVTAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGTVLYPMARLHPTLQRFGKFCGIVTMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPNVSLIRWAFQGLSINEFSGLKFDHQHSFDIQTGEQALERISFGKSRIRDTVIAQNRILLFWYCTTYLLLEKNKPKYQQLESPIDHNKSHLKIEELNSEEVDQSQTLEAPPPPVSQVDSNQPLASPKADFVGPFILEGL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1939 759 CDD ABCG_EPDR 71 337 - -
Aed1g1939 759 SMART AAA_5 104 332 IPR003593 -
Aed1g1939 759 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 74 355 IPR003439 GO:0005524
Aed1g1939 759 Pfam ABC-2 type transporter 312 368 IPR043926 GO:0140359
Aed1g1939 759 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 3 206 - -
Aed1g1939 759 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 238 706 - -
Aed1g1939 759 PANTHER ATP-BINDING CASSETTE TRANSPORTER 3 206 - -
Aed1g1939 759 PANTHER ATP-BINDING CASSETTE TRANSPORTER 238 706 - -
Aed1g1939 759 MobiDBLite consensus disorder prediction 720 745 - -
Aed1g1939 759 Pfam ABC-2 type transporter 428 638 IPR013525 GO:0016020|GO:0140359
Aed1g1939 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 341 IPR027417 -
Aed1g1939 759 Pfam ABC transporter 95 282 IPR003439 GO:0005524
Aed1g1939 759 Gene3D - 66 344 IPR027417 -
Aed1g1939 759 MobiDBLite consensus disorder prediction 720 743 - -
Aed1g1939 759 MobiDBLite consensus disorder prediction 44 67 - -
Aed1g1939 759 ProSitePatterns ABC transporters family signature. 255 269 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1939 Aed-Chr1 16530023 16537550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1939 94 337 Calmodulin-binding Proteins AT2G36910 26.230 1.81e-07 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1939 1 16530023 16537550 Aed1g1939 1 16530023 16537550 ECH