Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1918 ATGGCTTCACGCAGACTCGTATCCTCTCTGATTCGATCCTCCCTGCGTAGATCCCAATCGAAGCCCTCAATTACCGAATCCGCATCGAGGCTCTCGTCCTCGACCCGTGCCTCGCCGCACGGATACTTGCTCAACCGCGTCGCCGAGTACGCCACCGCGGCGGCGGCTGCCACCGCTCCTCCCTCTGCTCCTCCTCCGGGGAAGAAGGAGCTCGGCGGTGGTGGGAAGATCACCGATGAGTTCACCGGGAAGGGCTCGATCGGGCAGGTCTGCCAGGTCATCGGTGCCGTCGTCGATGTCAGATTCGAAGAGGGTTTGCCTCCGATCATGACCGCACTCGAGGTTCTGGATCACTCCACGAGGCTCGTGTTGGAGGTGGCGCAGCATTTGGGTGAGGGCGTTGTCCGAACCATTGCTATGGATGCCACCGAAGGGGTCGTTAGAGGGTGGCGCGTCCTCAACACTGGCTCCCCTATTACCGTTCCAGTTGGTAGGGCTACCCTTGGCCGTATCATAAATGTCATTGGAGAGCCTATTGATGCCAAGGGAGAACTCAATACCGAGCATTATTTGCCCATCCATAGAGAAGCTCCTGCTTTTGTTGAGCAAGAAACTGCACAGCAGATTCTCGCTACTGGGATCAAGGTTGTTGACCTGCTTGCACCATATCAAAGAGGAGGAAAGATTGGGCTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAAGCTCATGGTGGTTTCTCCGTGTTTGCTGGTGTTGGCGAACGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGATCAGCAGAGTGAAAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCCCGTGCCCGGGTTGGTCTTACTGGTCTTACTGTTGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTCGTAGACAACATTTTCCGTTTTACCCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCAACCAACCTTGTCTACTGATCTTGGAGCTCTTCAAGAGCGTATTACTACAACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCGCTTTTGCTCACTTGGATGCCACAACAGTGTTATCACGACAGATCTCCGAGATTGGTATCTATCCTGCTGTTGACCCCTTGGATTCTACATCTCGTATGCTTTCCCCTCTTATTTTGGGTGAGGATCACTATGAAACTGCTCGCGGTGTACAGAAAGTACTTCAGAACTATAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGATGAGCTTAGTGAAGATGATAAATTGACTGTTGCCCGTGCCCGTAAGATTCAGCGATTCTTGAGCCAGCCTTTCCATGTTGCAGAAGTCTTCACTGGTGCCCCTGGAAAATATGTTGAGTTGAAGGAGAACATCACCAGCTTCCAGGGTGTATTGGATGGGAAATACGATGACCTCTCTGAGCAGGCGTTTTACATGGTTGGAGGTATTGATGAGGTGATTGCTAAGGCTGAGAAAATTGCTAAGGAATCTGCAGCATCTTAA 1680 0.5036 MASRRLVSSLIRSSLRRSQSKPSITESASRLSSSTRASPHGYLLNRVAEYATAAAAATAPPSAPPPGKKELGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFEEGLPPIMTALEVLDHSTRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEPIDAKGELNTEHYLPIHREAPAFVEQETAQQILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDQQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATAFAHLDATTVLSRQISEIGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENITSFQGVLDGKYDDLSEQAFYMVGGIDEVIAKAEKIAKESAAS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1918 559 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 557 - -
Aed1g1918 559 MobiDBLite consensus disorder prediction 1 37 - -
Aed1g1918 559 Gene3D - 159 436 IPR027417 -
Aed1g1918 559 SMART AAA_5 225 497 IPR003593 -
Aed1g1918 559 Hamap ATP synthase subunit beta [atpB]. 85 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Aed1g1918 559 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Aed1g1918 559 CDD F1-ATPase_beta 158 439 - -
Aed1g1918 559 CDD ATP-synt_F1_beta_C 441 548 - -
Aed1g1918 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 90 156 IPR004100 GO:0046034|GO:1902600
Aed1g1918 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 437 553 - -
Aed1g1918 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 213 434 IPR000194 GO:0005524
Aed1g1918 559 MobiDBLite consensus disorder prediction 57 77 - -
Aed1g1918 559 CDD ATP-synt_F1_beta_N 86 159 - -
Aed1g1918 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 425 434 IPR020003 GO:0005524
Aed1g1918 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 440 IPR027417 -
Aed1g1918 559 TIGRFAM atpD: ATP synthase F1, beta subunit 87 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Aed1g1918 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 84 158 IPR036121 GO:0046034|GO:1902600
Aed1g1918 559 PIRSF ATPase_subunit_beta 3 558 - -
Aed1g1918 559 PANTHER ATP SYNTHASE 3 557 - -
Aed1g1918 559 Gene3D - 437 559 IPR024034 -
Aed1g1918 559 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Aed1g1918 559 Gene3D - 76 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1918 Aed-Chr1 16434213 16438250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1918 117 495 Primary Pumps ATPases(2) AT1G20260 28.851 3.84e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1918 1 16434213 16438250 Aed1g1918 1 16434213 16438250 ECH