Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1901 ATGCATAATAAGGACGTTTGCTCTCCCTCCTCCAACGGCGGATTCGGCGGCGGCGCCTCCACCGGTCAAATGCCGTCAACCGGCGGCATCTATAGTTCGCTGTACTCGGCTCTGTCGAGCGAGAACCTTCCCTCGCTCTCCGCGAACTGCAGCAACGTCGGCGGCGGCGGCGTTTCGCTGTATCCTTACTCCGAGTCAGCAACTCAGTACGACTCGTGCATTATACAGAAGCATCAGGACATGGTCAACCGTCAAAGCATGTGTCTGAACCGCCTCGTGGAGACTACCAAGGAGGTAGAGGCCCTGAGGCAGGAGAACGGCCAGCTCCGAGCCGCGAACAAGGAGCTGCAGAAGCAGCTGCACCTTGTCATCCAGGCCTCGCTGGAGAATCACTATGGCGGCGGCGGCGGCTCCTCCATCCAGTCGCAACCGACGCTGTTCGATGTCTTGCATGGCTTCCACGGCCTCCACATTGGGGAAGGGAAAGAGAATTATGCCGATTGGAACAACAACAACAACGTCCATAATCATAATCCTCATAACAATGTTATGAATAATAATAATAATAATAATAATAACAACAATAAGGAGTTGCAGGAAATTTCGGACGAGAGTCCAACGAGTGTGATTGAGAGTAATAACGTGGTGGAAGTGGAGAGGTTCTCTCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTAAAGATGGCTCAGCCTGCGCCTCTTGCCCCCAACAATAATAATGCCACTCGCAACAAAGGCGCCACTCGCCCACGCGCCTCCGCCACTCCACCTGAACCCGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGGTAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAATAAGTGGCAGGAAACTGGGACGTGCCCATATGGAGACCACTGCCAATTTGCTCATGGTATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCCGAATGGTCCTTGCTGGGGTTGTCTGCCCATATGGCCACAGATGCCACTTCCGCCATGCTCTTACTGAGCAAGAGAAAGCTGCTGTCGTATCATCACAGCCTAAGCCCTGCAGATCCATGAAGCTCGAAAGATAA 1146 0.5288 MHNKDVCSPSSNGGFGGGASTGQMPSTGGIYSSLYSALSSENLPSLSANCSNVGGGGVSLYPYSESATQYDSCIIQKHQDMVNRQSMCLNRLVETTKEVEALRQENGQLRAANKELQKQLHLVIQASLENHYGGGGGSSIQSQPTLFDVLHGFHGLHIGEGKENYADWNNNNNVHNHNPHNNVMNNNNNNNNNNNKELQEISDESPTSVIESNNVVEVERFSLPKSISVRSNGYLKMAQPAPLAPNNNNATRNKGATRPRASATPPEPVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAAVVSSQPKPCRSMKLER 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1901 381 MobiDBLite consensus disorder prediction 238 277 - -
Aed1g1901 381 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Aed1g1901 381 Coils Coil 92 119 - -
Aed1g1901 381 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g1901 381 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Aed1g1901 381 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Aed1g1901 381 MobiDBLite consensus disorder prediction 179 207 - -
Aed1g1901 381 MobiDBLite consensus disorder prediction 242 258 - -
Aed1g1901 381 SUPERFAMILY CCCH zinc finger 327 361 IPR036855 GO:0046872
Aed1g1901 381 ProSiteProfiles Zinc finger C3H1-type profile. 331 359 IPR000571 GO:0046872
Aed1g1901 381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 49 366 - -
Aed1g1901 381 Coils Coil 181 204 - -
Aed1g1901 381 SUPERFAMILY CCCH zinc finger 290 325 IPR036855 GO:0046872
Aed1g1901 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 319 IPR000571 GO:0046872
Aed1g1901 381 Gene3D - 327 364 - -
Aed1g1901 381 Gene3D - 288 326 - -
Aed1g1901 381 PANTHER CCCH ZINC FINGER/TIS11-RELATED 49 366 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1901 63 379 C3H Transcription Factor Family AT1G68200 46.769 7.90e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g1901 zf-CCCH 3.1e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1901 1 16289566 16291723 Aed1g1901 1 16289566 16291723 ECH