Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1894 ATGGAGGCGCAACCGCCAACCCCCTCGACGGCGCCGCCGCACCTCAACTACCCTGACTCCGTTGAATCCTCGCCTCGCTCCCGCAACACCGACTCCTGGGACGAGCCCTTCGCACCGGCTTCGACCAAGCTCCGTCTCATGTGCAGCTACGGCGGCCACATCGTCCCCCGCCCCCACGACAAATCCCTCTGCTACGTCGGCGGCGACACGCGCATAATCGTGGCCGAACGCGCCACCTCACTCGCGGACCTCTCCACGCGCCTCTCCAAGACGTTCCTGAACGGAAGACCCTTCACGCTCAAGTACCAGCTCCCCAACGAGGACCTCGATTCCCTCATTTCCGTCACAACCGACGAAGACCTCGAGAACATGATCGACGAGTACGACCGCACCGCCGCCGCCGCAACCTCCGCCGTCAAACCCTCTCGCATCCGCCTCTTCCTCTTCCCCACCAAACCCGATACCACTCATTCCATCCCTCCGCAAATTCTTGACACATCAGTCAAATCGGACGATTGGTTCTTGAATGCGTTAAACGGCGCCGGATTGCTTAACCGCGGGTTTTCTGATTCTGCTTCTGTTAATTGCCTTCTTGGACTTGACGACGAGGTTGCCGGGAACAACCTCGAACCTGGTTCGAAGGACGGTGGGGATGGTGGTGGTGGTGGTGGCGGCGTTGGTGGTGGTGCCTCGCAGGGTGGATCTTTCGGGAACGGCAAGAATTTGAAACAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACGACGTCGTCGTTTGGTTCCACTTCGTCGTCGCCCTCGCTCGCGAACTTGCCGCCGATTAGGGTTCACGTGGTGGAGGATCAGAAGGTGTTGGGGATTGAGGAGCAGTTCGCGCAGATGGGGGTTGGTTTGGGGCAGAAGCAGCAGCAGCAGCAGCAGGATGAGGGTTTTGTTTTGCTGTCTTCGCCGCCTCCGCCGCCGGTGCCGGTGACCCTCGCCGCCATGGGTGTGCCGATTGGGCCTGGCGCGGTGGTTGCTGGGGAGTATCTCAACCGGGTTGTCTCCGATGATGAGAGATCCGATCACGGGGTTCCTGTTGGGTATAGAAAACCACCGACTCCTCAACCACAGGTTCAGTCACAGTCACAGGCACAAACGCAAACACTTGCTCCTCAATTTCAACAGAAGTCAACTGGTGTTGTTGATTTGCCTTCTCCCGATTCAGTTTCAAGTGATAGTAGTCTCGCGAATGCAATCTCGCGTTCGAAACCTGCTGTTTATCAAGAACAACAACATCCCCAGCATCCACAGGTTTACTATGTTCCTGCGAGACAGGCACAGGCTTACAACCTGCCTGTGCAGCAGCAGGCTAATATGAGTGAGTCTGCTGGGAACATCGCTTCTAGCCGGCCACAGACTCCGCCAAACCCTGCTACATTGGTTCCACAACCTGCCACTTACAACCCCATTAGAAATACTCCCATGCCTAAAACTGAAATGAATGCTTACAGAGCTGCAACTGCAGGCTCCCCTCAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCAGCAATATGTCACTTACTCACAGATTCACCATCCATCTCAGTCCATGGCCCCCAATTCTGCTGCCCCGGCAAATTATGCTTTTGATTATGCGGATCCTGCTCATGCTCAAATATACTACTCTCAACCTATGGCGCCCTCAATGCCTTCACAGTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCAGCTCAGCATCCCTCAGACACTGTGAAGCAGAGCAGATAA 1791 0.5583 MEAQPPTPSTAPPHLNYPDSVESSPRSRNTDSWDEPFAPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLADLSTRLSKTFLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAATSAVKPSRIRLFLFPTKPDTTHSIPPQILDTSVKSDDWFLNALNGAGLLNRGFSDSASVNCLLGLDDEVAGNNLEPGSKDGGDGGGGGGGVGGGASQGGSFGNGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVLGIEEQFAQMGVGLGQKQQQQQQDEGFVLLSSPPPPPVPVTLAAMGVPIGPGAVVAGEYLNRVVSDDERSDHGVPVGYRKPPTPQPQVQSQSQAQTQTLAPQFQQKSTGVVDLPSPDSVSSDSSLANAISRSKPAVYQEQQHPQHPQVYYVPARQAQAYNLPVQQQANMSESAGNIASSRPQTPPNPATLVPQPATYNPIRNTPMPKTEMNAYRAATAGSPQLVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAAPANYAFDYADPAHAQIYYSQPMAPSMPSQYQTMTAAAVMMQEGSAQHPSDTVKQSR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1894 596 MobiDBLite consensus disorder prediction 452 484 - -
Aed1g1894 596 ProSiteProfiles PB1 domain profile. 43 151 IPR000270 GO:0005515
Aed1g1894 596 PANTHER EXPRESSED PROTEIN 426 593 - -
Aed1g1894 596 PANTHER EXPRESSED PROTEIN 1 428 - -
Aed1g1894 596 Pfam PB1 domain 59 150 IPR000270 GO:0005515
Aed1g1894 596 MobiDBLite consensus disorder prediction 14 36 - -
Aed1g1894 596 MobiDBLite consensus disorder prediction 452 470 - -
Aed1g1894 596 MobiDBLite consensus disorder prediction 208 272 - -
Aed1g1894 596 MobiDBLite consensus disorder prediction 353 430 - -
Aed1g1894 596 CDD PB1_UP2 47 149 - -
Aed1g1894 596 PANTHER OS05G0427100 PROTEIN-RELATED 1 428 - -
Aed1g1894 596 PANTHER OS05G0427100 PROTEIN-RELATED 426 593 - -
Aed1g1894 596 SMART PB1_new 58 149 IPR000270 GO:0005515
Aed1g1894 596 MobiDBLite consensus disorder prediction 251 272 - -
Aed1g1894 596 MobiDBLite consensus disorder prediction 369 430 - -
Aed1g1894 596 MobiDBLite consensus disorder prediction 1 36 - -
Aed1g1894 596 SUPERFAMILY CAD & PB1 domains 59 159 - -
Aed1g1894 596 Gene3D - 63 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1894 Aed-Chr1 16216474 16219441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1894 40 261 MAP Kinase Kinase Kinase AT1G79570 32.743 2.79e-24 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1894 1 16216474 16219441 Aed1g1894 1 16216474 16219441 ECH
Aed1g1894 1 16216474 16219441 Aed7g0246 7 1729962 1732432 ECH