Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1890 ATGGAATCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGACAAACAAGATCATGATGGCATAATTGATCTCGGTCTTAGCCTCGGAACTGTTCAACATGAAGCTTACCATTCTTCTGCCAACTTGTATGATGATGACCTTATGGATTGGCCTCAGTCCAATAGTCTGAATGTGAAGAATTCAAGCACAATGCAGCATTCAAGATGTGTCCAGCAAAATTTGGATGAAGAGATAGAAGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTCTGTACTTGATCACGCTGGATACTCAACCCTAGCACTCCAATTAGAAGACATGTTTGGAAGCCAATCTGTTTCTGGATTAAGATTGTTCCAATCGGGATCAGAGTACTCATTGTTTTACAAGGACAGACAAGATAATTGGAGGCCTGTCGGTGATGTACCATGGAGAGAGTTCATAGAATGTGTGAAGCGGTTGAGGATTGCAAGAAAGAATGAGGGCATTGTTTCCTATTCATCAAGATACACCTAA 582 0.4107 MESNTSSFLLNSSTLHSVFYQDKQDHDGIIDLGLSLGTVQHEAYHSSANLYDDDLMDWPQSNSLNVKNSSTMQHSRCVQQNLDEEIEGVQSNERWAYVKVNMDGVTIGRKISVLDHAGYSTLALQLEDMFGSQSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWREFIECVKRLRIARKNEGIVSYSSRYT 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1890 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 184 IPR003311 GO:0005634|GO:0006355
Aed1g1890 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 184 - -
Aed1g1890 193 Pfam AUX/IAA family 58 185 IPR033389 -
Aed1g1890 193 Gene3D - 89 190 - -
Aed1g1890 193 ProSiteProfiles PB1 domain profile. 95 183 IPR000270 GO:0005515
Aed1g1890 193 SUPERFAMILY CAD & PB1 domains 95 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1890 Aed-Chr1 16198590 16199543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1890 96 183 B3 DNA Binding Superfamily AT1G19850 36.364 3.00e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aed1g1890 AUX_IAA 1.1e-23 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1890 1 16198590 16199543 Aed1g1890 1 16198590 16199543 ECH