Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1889 ATGCTCCCTTTTGCTTTGTTCCTTTTTCTTCTTTGCTGCAACTCTCTTGCACCCGTGGTGTATTCTCTGAATGCCGAAGGTTCTGTGCTTTTGACACTTAAGCAGTCCCTCACTGACCCACAAGGGTCCATGAGTAACTGGAATTCTTCTGATCAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAAACTGTTGTGTCCATTAGCATCCCTAAAAGGAAACTCTATGGCTCTCTTCCTTCTTCTCTGGGATCTCTCTCCCAGCTCCGCCATGTCAACTTCAGGAACAACAAGCTCTTTGGAAACTTACCTCCACAGCTCTTTCAGGCTCAGGGACTTCAAAGCTTGGTGCTTTATGGCAATTCACTTTCTGGGTCTGTTCCAAGTGAGATTCAGAACCTCAGGTACCTTCAAACTCTAGATTTATCTCAAAACTTCTTCAATGGGTCATTGCCTGCTGCAATTGTCCAGTGCAAGAGACTCAAAACTCTTGTTCTCAGTCAGAACAACTTCACTGGCCCTTTGCCAGATGGGTTTGGCACTGGTTTGTCTTCTCTGGCAAGACTAGACCTTTCTTTCAATCACTTCAATGGGTCAATTCCCAGTGACTTGGGAAATCTGTCAAGCCTGCAAGGAACTGTTGATTTATCTCATAATCATTTTAGTGGTTCAATCCCAGCCAGCCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTTACTTACAACAATTTAAATGGTCCAATACCCCAAAATGGTGCTTTGATTAATAGAGGGCCAACTGCTTTTATTGGCAATCCTCGTCTATGTGGTCCTCCTTTGAAGAATTCATGTGCTTCTGATACTTCATCTTCTACTTCACCTTCCTCATTTCCATTTATTCCTGATAACTACCCACCTCAGGGTACTACTGGTAATGGTTCCATGAGAAGTGAGAAAAACAAAGGGCTAAGTAAGGGAGCTGTGGTTGGCATAGTTGTGGGTGATATAATTGGAATTTGCCTTTTAGGTTTGCTCTTCTCTTTTTGCTACTCAAGGGTGTGTGGTTTTAACCAGGATCTGGATGAGAATGATGTTAGCAAGGGGGGAAGGAAAGGGAGAGAAGAGTGCTTCTGCTTCAGAAAGGATGAATCTGATGTCCTATCCGATAATAATGTTGAGCAATATGATCTTGTCCCATTAGATTCTCATGTGAACTTTGATTTGGATGAGCTTCTAAAGGCTTCAGCTTTTGTGCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGGCTTGCATTAGCTGTGAGGAGATTGGGAGAGGGAGGCTCTCAAAGGTTTAAAGAGTTCCAAACAGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCTACTCTGAGAGCCTATTACTGGTCTGTTGATGAAAAGCTTCTCATATATGATTATGTACCCAATGGAAGCCTTGCTACAGCAATCCACGCAGCAGAGAAAGTACAAGGAAGGCAAAAGAGCATGTCCACTGAAGTCACAACCAATGTGTTGGGAAACGGTTATATGGCACCAGAAGCACTGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTATACTCATATGGAGTGATATTGTTGGAAATGATAACAGGAAGATCATCCATTGTGGTAGTGGGGAACTCAGAAATGGAGCTTGTTCAGTGGATTCAGTTGTGCATTGAGGAAAAGAAGCCACTGTTGGAGGTGTTGGACCCTTACTTGGGTGAAGATGCAGATAAGGAGGAGGAGATTATTGGAGTTTTGAAGATTGCAATGGCTTGTGTCCATAGCAGCAGCCCTGATAAGAGACCTTCTATGAGACACGTGCTTGATGCTTTGGATAGACTCACTATTTCATCTGATTGA 1902 0.4327 MLPFALFLFLLCCNSLAPVVYSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDQNPCSWNGITCKDQTVVSISIPKRKLYGSLPSSLGSLSQLRHVNFRNNKLFGNLPPQLFQAQGLQSLVLYGNSLSGSVPSEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKTLVLSQNNFTGPLPDGFGTGLSSLARLDLSFNHFNGSIPSDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNNLNGPIPQNGALINRGPTAFIGNPRLCGPPLKNSCASDTSSSTSPSSFPFIPDNYPPQGTTGNGSMRSEKNKGLSKGAVVGIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDENDVSKGGRKGREECFCFRKDESDVLSDNNVEQYDLVPLDSHVNFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYVPNGSLATAIHAAEKVQGRQKSMSTEVTTNVLGNGYMAPEALKVVKPSQKWDVYSYGVILLEMITGRSSIVVVGNSEMELVQWIQLCIEEKKPLLEVLDPYLGEDADKEEEIIGVLKIAMACVHSSSPDKRPSMRHVLDALDRLTISSD 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1889 633 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Aed1g1889 633 Gene3D Transferase(Phosphotransferase) domain 1 490 632 - -
Aed1g1889 633 ProSiteProfiles Protein kinase domain profile. 409 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1889 633 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 505 632 - -
Aed1g1889 633 SMART LRR_typ_2 185 209 IPR003591 -
Aed1g1889 633 SMART LRR_typ_2 136 160 IPR003591 -
Aed1g1889 633 SMART LRR_typ_2 88 112 IPR003591 -
Aed1g1889 633 Pfam Leucine rich repeat 90 147 IPR001611 GO:0005515
Aed1g1889 633 Gene3D Ribonuclease Inhibitor 17 73 IPR032675 -
Aed1g1889 633 MobiDBLite consensus disorder prediction 282 315 - -
Aed1g1889 633 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 505 632 - -
Aed1g1889 633 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 4 497 - -
Aed1g1889 633 Pfam Protein kinase domain 505 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1889 633 Gene3D Phosphorylase Kinase; domain 1 379 484 - -
Aed1g1889 633 SUPERFAMILY L domain-like 25 276 - -
Aed1g1889 633 Gene3D Ribonuclease Inhibitor 74 288 IPR032675 -
Aed1g1889 633 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 497 - -
Aed1g1889 633 SUPERFAMILY Protein kinase-like (PK-like) 414 628 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1889 Aed-Chr1 16193055 16195611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1889 6 630 Receptor kinase-like Gene Family AT1G25320 53.683 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed1g1889 Pkinase 2.3e-08 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1889 1 16193055 16195611 Aed1g1889 1 16193055 16195611 ECH