Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1879 ATGGCTCTAGTTGATTTGTTCTGCTTCCTCTTGTTTTCTCACCTTGTACTCATTCTCTCTGCTGGTTATGGAAATGGGCACCAAGGTTGTCCACACTCCTTTACTTGTGGGCATCTTGGGATTTTCCATTACCCTTTTACCAAGGCAGAACAACCTGAGTGTGGCTTGCTAGCCATACATGATTGTGATAATACTCTTTCACACAAACGCACGATTCAGCTGGGGAAAAATGGAAAAAGCATAGTGCTTACAGGCGTCGCGCAGCAGAATTCTATTTCAATCTTGGATGAAGATTTTCACAAGCGTTTACAAGAAAACACTTGTGGCACTTTGAACAATAATTATAGTCTTTCATCACCTTCTTCTCTGTATTCTATTCATATAAAATATAATGTAACCATGTTCCGATGCAAGCACGGCCTCAAAATCAACCACCCAGCACATTATTTTAATCACTCCTGCCCTGACTATAACTATGATATCTATTATGACAGCCTTCCCTCTCCTAATAATGAGGAAGCTCGTACCATTTTCTCATCCTGTGCAGTTCTTCAGTTATCAAAAAAAGACTTGACTGATACCACTGACCTACTATCGTTTGTATCTGCTGAGATGGTTCTTCAACTAGTATTATCTGATGATTGTGATGAGTGCTATAATCGTAGAGGAGGCCAATGTCGGCTTTACAGCAATCAAAAGTTCTATTGTGAAAAAGGTTCAAAGCATAAGAGTAAAATTTTGAAGCTGATACTTGGACTAGTAACAGGTTTAAGTGTTATATTGTCAGCCATTCTGATAATTGGATGCATAGTACTTAGACGACGAAAACACAGTACTCTTTCAGAACCCCAATACCAACCAAGAAACACACATAGTGATGATGCGATTGGTCCCAGCTCAAATCCAGAGCCAGAAAATGGCAGGTTCTACTTTGGAGTCCCTCTCTTCTCTTACAAGGAGCTTCAAGAAGCTACATATAATTTCCACCACGCCAGACAACTTGGAAGTGGAGGCTTTGGAACAGTTTACTATGGTAAACTGCAAGATGGAAGAGAAGTTGCTATCAAGCGTCTATATGAGCACAACTACAGGAGAGTAGAACAGTTCATGAACGAAGTTCAAATCCTCACACGCTTGCGCCACACAAATCTAGTGTTCCTATATGGCTGCACTTCAAGTCACAGCCGTGAACTACTCCTTGTGTACGAACATGTTGCAAATGGCACTGTTGCTTGCCATCTCCACGGTGAGTTAGCAAGGCGCGGTGGCACTCTTCCATGGCACATAAGAATGAAAATAGCCATAGAGACCGCAAGTGCATTGTCTTACCTCCATGCTTCCGACATCATCCACCGCGATGTCAAAACAAAAAACATTCTCCTAACCGAAAGTTTCAGTGTTAAGGTTGCGGACTTTGGTCTTTCAAGTGAGCTGGTTGATCCTTCTCTGGGTTTTGATTCAGACGGTGAGGTGAAGAGGATGATGGTTTCGGTGGCGGAATTGGCTTTTCAGTGTTTGCAACGGGACAAGGAATTGAGACCCTCAATGGAGGAGGTTTTGAAGGTGCTGATCAGAATTGAAAGTGGGAAGGATATGGCTGAGCATCTAGATGAAGACGATTTACGTCCTCCCTCTCTGCCTTCACCAGATTGGGATGATAATCGATTAGTGAACAAAATTATGATGGTTCATCCTTCGCCTAAAGCCGTCACTGATAGATGGCAGAGTCAATCTACTACTCCTACGCCTAGTCCCAGTGGTTAA 1764 0.4257 MALVDLFCFLLFSHLVLILSAGYGNGHQGCPHSFTCGHLGIFHYPFTKAEQPECGLLAIHDCDNTLSHKRTIQLGKNGKSIVLTGVAQQNSISILDEDFHKRLQENTCGTLNNNYSLSSPSSLYSIHIKYNVTMFRCKHGLKINHPAHYFNHSCPDYNYDIYYDSLPSPNNEEARTIFSSCAVLQLSKKDLTDTTDLLSFVSAEMVLQLVLSDDCDECYNRRGGQCRLYSNQKFYCEKGSKHKSKILKLILGLVTGLSVILSAILIIGCIVLRRRKHSTLSEPQYQPRNTHSDDAIGPSSNPEPENGRFYFGVPLFSYKELQEATYNFHHARQLGSGGFGTVYYGKLQDGREVAIKRLYEHNYRRVEQFMNEVQILTRLRHTNLVFLYGCTSSHSRELLLVYEHVANGTVACHLHGELARRGGTLPWHIRMKIAIETASALSYLHASDIIHRDVKTKNILLTESFSVKVADFGLSSELVDPSLGFDSDGEVKRMMVSVAELAFQCLQRDKELRPSMEEVLKVLIRIESGKDMAEHLDEDDLRPPSLPSPDWDDNRLVNKIMMVHPSPKAVTDRWQSQSTTPTPSPSG 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1879 587 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 477 582 IPR044652 -
Aed1g1879 587 ProSiteProfiles Protein kinase domain profile. 328 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1879 587 MobiDBLite consensus disorder prediction 570 587 - -
Aed1g1879 587 SUPERFAMILY Protein kinase-like (PK-like) 313 550 IPR011009 -
Aed1g1879 587 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Aed1g1879 587 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 475 IPR044652 -
Aed1g1879 587 MobiDBLite consensus disorder prediction 282 299 - -
Aed1g1879 587 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 6 475 - -
Aed1g1879 587 Pfam Protein tyrosine and serine/threonine kinase 330 478 IPR001245 GO:0004672|GO:0006468
Aed1g1879 587 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 477 582 - -
Aed1g1879 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Aed1g1879 587 Gene3D Phosphorylase Kinase; domain 1 305 404 - -
Aed1g1879 587 MobiDBLite consensus disorder prediction 567 587 - -
Aed1g1879 587 Gene3D Transferase(Phosphotransferase) domain 1 405 490 - -
Aed1g1879 587 MobiDBLite consensus disorder prediction 281 305 - -
Aed1g1879 587 SMART serkin_6 328 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1879 Aed-Chr1 16122066 16124551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1879 29 584 Receptor kinase-like Gene Family AT1G25390 36.505 2.81e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aed1g1879 PK_Tyr_Ser-Thr 2.5e-33 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1879 1 16122066 16124551 Aed1g1879 1 16122066 16124551 ECH