Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1877 ATGAGCAGTATAGACAGTTTTGGAATCGTTTTGATTTCTCATCTAGCGGTAGCGGTAGCGGTGGTGGTTCTCTCATGTGGGAATGCTAATGGGCACCATGTGCATGATGATGATGATTGTCCAGACTCATTTGATTGTGGAAGTTTGGGGAGAATTTCGTTCCCCTTCACCACAGAGCAACACCAGAACTGCGGTGCTTTGGCAATCCATGGTTGTAATGATCCCAACAAAACAGCACTGAAGCATGTCCAGTTGAAGAATGGCGGATTAAAAGTGTTCCAAGTAACACAAATTCATAGTCATCATGGGAGCCCTAGTATTTCCATTATCGATCAAGAGTTCAGCAAGCTTCTGGCAAATGTTAGTTGTATGGCCTTGAGCTATAACATCACCGTCCCTCCCTCCTCTTCTGCTTTCGGCTATTTTGATATTCAAAACAATATAACCGCCTTCAATTGCAGCCTCCATCATCCTGCAAAAGATTTCATCAGCTTTACCGGATGTCCTTCCTCTGTTTTTTACTTTGCCCCTCCATCCTCTGATAATGACTCCCTGCTTTCCTTAACCTCCCATTGTTCAATGGTTCAACTTCCCGTCAGACAAGATTCTCAGTTCTTCAAAGATCCATTTGGATTTTTAACTCCTCATATTACCTTCGAATTCAAGTTTTCAAATCAGTGTGCCCAGTGTTACAATGAAAATGGAAGAAGAAGAGGCAGCAATTGCCGACTTGACAGCAAGGGATTTTTTTATTGCGCCAACAATAGGAAAAGTGGAGTTTCGACTCGGAAGTTGGCATTGATGCTAGGCACCGGCATTGGACCATGGATCATATTTGGGTTGTTCCTCACGTTACGCCACTGCAAACGCAAACATGGTCAACCCAGCAACGCTAGTGCTGACCCCTACCCTAGTCGTGAGACAGAGAGTGACAGAATGTTCTTTGGAGTACCCGTGTTCTCTTACAATGAGCTTCAAGAAGCAACAAACAATTTTGACCCCACCAGAAAGCTTGGAGATGGAGGCTTTGGCATTGTTTACTATGGAACACTAAGAGATGGAAGAGAAGTTGCAATCAAACATCTGTTTGAGCACAATTACAAGAGAGTGGAACAGTTTATGAATGAAATCGAGATCCTTACTCGCCTACGCCACAGAAATCTTGTGTCCCTCTATGGCTGCACTTCACGTCACGGCCACGAGCTACTTCTTGTATATGAATACATTCCTAATGGCACAGTTGCTAGCCATCTCCATGGTGATTTAGCAAGGGTTGGAAAGCTCAGTGAGCTTGTAGACCCATCCTTTGGTTTTGAGTCAGACCAAGTAGTTAAAAGGATGCTAACTTCAGTGGCAGGGTTGGCCTTTCGGTGTGTGCAAGGAGACAATGAATTAAGGCCTTCTATGGATGAAGTTCTTGAAGCCCTCAAGAGTATTCAAAGTGGGAATTATGAGTCTGAGAATCTAGAGAAAAGAGATGATGGTGGTGGTGGTGGTGTTAGCGAAGAAGTACATCAACCACCACCAGCTTCGCCTGTGTCCTCGACTGAGAAACCAGAAATTGAATCTACCACGCCCAATGTCAGTGGTTAA 1593 0.4432 MSSIDSFGIVLISHLAVAVAVVVLSCGNANGHHVHDDDDCPDSFDCGSLGRISFPFTTEQHQNCGALAIHGCNDPNKTALKHVQLKNGGLKVFQVTQIHSHHGSPSISIIDQEFSKLLANVSCMALSYNITVPPSSSAFGYFDIQNNITAFNCSLHHPAKDFISFTGCPSSVFYFAPPSSDNDSLLSLTSHCSMVQLPVRQDSQFFKDPFGFLTPHITFEFKFSNQCAQCYNENGRRRGSNCRLDSKGFFYCANNRKSGVSTRKLALMLGTGIGPWIIFGLFLTLRHCKRKHGQPSNASADPYPSRETESDRMFFGVPVFSYNELQEATNNFDPTRKLGDGGFGIVYYGTLRDGREVAIKHLFEHNYKRVEQFMNEIEILTRLRHRNLVSLYGCTSRHGHELLLVYEYIPNGTVASHLHGDLARVGKLSELVDPSFGFESDQVVKRMLTSVAGLAFRCVQGDNELRPSMDEVLEALKSIQSGNYESENLEKRDDGGGGGVSEEVHQPPPASPVSSTEKPEIESTTPNVSG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1877 530 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Aed1g1877 530 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 426 529 - -
Aed1g1877 530 MobiDBLite consensus disorder prediction 483 530 - -
Aed1g1877 530 ProSiteProfiles Protein kinase domain profile. 332 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1877 530 SUPERFAMILY Protein kinase-like (PK-like) 310 421 IPR011009 -
Aed1g1877 530 Pfam Protein tyrosine and serine/threonine kinase 335 421 IPR001245 GO:0004672|GO:0006468
Aed1g1877 530 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 426 529 IPR044652 -
Aed1g1877 530 MobiDBLite consensus disorder prediction 508 530 - -
Aed1g1877 530 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 428 IPR044652 -
Aed1g1877 530 Gene3D Phosphorylase Kinase; domain 1 305 404 - -
Aed1g1877 530 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 24 428 - -
Aed1g1877 530 Gene3D Transferase(Phosphotransferase) domain 1 405 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1877 Aed-Chr1 16105657 16109166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1877 430 530 Receptor kinase-like Gene Family AT1G25390 35.135 2.47e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aed1g1877 PK_Tyr_Ser-Thr 9.2e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1877 1 16105657 16109166 Aed1g1877 1 16105657 16109166 ECH