Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1876 ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTTAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTTCGGGTTGGACATGCAGCTCAGTCCAGGAAAGGGGAGGATTACTTTCTGATTAAGACTGATTGTCAACGAGTTCCTGGGAACTCTTCATCATCCTTTTCTGTATTTGCGATCTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGGGATGAGTGGTTACAAGCTTTACCAAGGGCATTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTCGTAATAGTGGATAGGTGGACTGTGACTGTTGCATCTGTTGGAGATTCCCGTTGTGTACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATTGTTGGTGGTGCTGAGATTGGTCCACTTCGTTGCTGGCCAGGGGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGAGAGTTCATAGTTCCAATACCATATGTCAAACAAGTGAAGCTATCAAAGGCTGGTGGGAGGCTTATAATTGCCTCTGATGGCATATGGGATGCTATATCCTCAGAAATGGGTGCAAAATCTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACAAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATAATCCCACCTAATAATGAATTGACACCAACACCTCCCCCCCCAAAACGGAACAAACTGAGAGATCTTCTTTCCTTCAGGAAGAGGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCAGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCGGGGCAATCAACATCTGGCATTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTCCAAGCGAGGGCATTTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGCAAGGTCCTTTTCTATGTTCTGATTGCCGTGACAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTTATAG 1296 0.4576 MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRVGHAAQSRKGEDYFLIKTDCQRVPGNSSSSFSVFAIFDGHNGNAAAIFTREHLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCVLDTQGGAVTSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDAISSEMGAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPNNELTPTPPPPKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNSGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCSDCRDKKDAMEGKRPSGVKVL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1876 431 Gene3D - 35 302 IPR036457 -
Aed1g1876 431 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 2 431 - -
Aed1g1876 431 PANTHER ALPHABET, ISOFORM E-RELATED 2 431 - -
Aed1g1876 431 SMART PP2C_SIG_2 51 297 IPR001932 -
Aed1g1876 431 SMART PP2C_4 27 295 IPR001932 -
Aed1g1876 431 SUPERFAMILY PP2C-like 40 297 IPR036457 -
Aed1g1876 431 Pfam Protein phosphatase 2C 61 267 IPR001932 -
Aed1g1876 431 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Aed1g1876 431 CDD PP2Cc 44 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1876 Aed-Chr1 16094700 16099359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1876 1 431 PP2C-type Phosphatase Gene Family AT1G68410 78.490 0.0 693
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1876 1 16094700 16099359 Aed1g1876 1 16094700 16099359 ECH