Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1873 ATGGCAGCAACACTCTCTCACCTCGTTGCTGTTTTCCATCTTCTTCTTCTCATGGTTCAAGGTTTTAGTAACCCAGATTTCGACGCTTTAGTGGCTTTCAAAACCGCTTCAGACACGTCCCAGAAGCTCACAACATGGAACATTAACAGCACCAATCCATGTTCCTGGAACGGCGTGTCGTGCATTCGTGACCGAGTCTCGCGACTCGTTCTCGAAAACCTAGACCTAGAAGGTTCCATTCACCCCTTAACTTCTCTAACTCAGCTCCGAGTTCTGAGTCTCAAAGGGAACCGTTTCTCCGGTCCCGTTCCCAACCTCTCCAACCTCACTGCCCTGAAACTCCTCTTCTTATCACTCAATGCCTTCTCCGGCGAGTTTCCGGCGACCTTCACGTCGCTTTTCCGCCTTTACCGTCTCGATCTGTCGAACAACAACTTCTCCGGCGAGATTCCGGCGACGGTCAATCACTTGACCCACCTCCTCACTCTCCGCCTCGACGGAAACAAATTCTCTGGCCACATTCCCGACGTGAACCTCCCAGAACTCCAAGAGTTCAACGTCTCCGGCAACCGCCTCTCCGGCGACATACCCAAGTCCTTATCAAATTTTCCAAAATCCTCATTCGGGCAAAACCAATTTCTTTGCGGAGCCCCAATCAAAAACTGCACGTCCGACCCGACAAAACCCGGATCCGAAGGCGCCATTGCTTCACCGTTGGTGCCACAAAACAATAACCCAACAACCACTGTATCATCTTCGCCAAGTTCATTGCCGAAAACATCAACATCAACAAGTAGCAAAAGCCACGAAAAGGGAGCTTCGAAGATAAGTCCAGTGGCGCTTATAGCAATTATAGTGGGTGATGTTTTGGTTCTTGCCATAGTGTCATTGCTTCTGTATTGCTACTTCTGGAGGAACTACAAGTTGAAGGAAGGGAAAGGGTCGAAGCTTTTCGAGAGTGAGAAGATTGTGTATTCCTCGAGTCCTTACCCTGCTCAGGGAGGGTTTGAGAGGGGTCGAATGGTGTTCTTCGAAGGTGAGAAAAGATTTGAACTTGAGGACTTGCTTCGAGCCTCTGCGGAAATGCTTGGGAAGGGTGGATTTGGGACTGCGTACAAAGCAGTGCTCGATGATGGCAACGTTGTTGCGGTGAAGAGACTCAAGGACGCGCAGATAACAGGGAAGAGAGAGTTCGAGCAACACATGGAGGTGTTGGGAAGGTTTAGACACCCCAATGTAGTTAGTTTGAGAGCTTATTATTTCGCGCGAGAGGAGAAGTTGCTGGTCTATGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACGAGGCTGAGGATAGCAGCGGGAGCGGCCCGAGGCGTGGCCTTCATTCATAACTCGTGCAAGTCCCTTAGACTCATCCACGGTAACATCAAATCCACCAACGTCCTACTCGACAAGCAGGGGAATGCACGCGTGTCTGATTTTGGGCTATCCGTGTTCGCGGGCCCAGGCCCAATGGGTGGGAGATCCAACGGCTACCGCGCCCCGGAGGCATCGGACGGTCGAAAACAGACTCAGAAGTCTGACGTGTACTCTTTCGGTGTGCTCCTGCTGGAGCTGCTGACAGGGAAGTGCCCGTCTGTGGTGGAAAGTGCAGGGAGTGCTTACGGTGGGGGCGTGGACCTACCAAGGTGGGTCCAGTCAGTGGTGAGGGAGGAGTGGACCGCTGAGGTGTTTGATTTGGAGCTGATGAGGTATAAGGATATTGAGGAGGAGATGGTGGGCCTGCTTCAGATTGCGATGACGTGTACCGCACCTTCACCTGATCAACGCCCCAGGATGACCCACGTCGTCAAGATGATTGAAGAGTTGCGTGGGGTCGAAGTGTCGCCGTTTCATGACTCGTTGGATTCGGTGTCTGACTCACCTTCCTTGTCTGAAGATGCCTGTGGAACCAGTCAGTAA 1992 0.5226 MAATLSHLVAVFHLLLLMVQGFSNPDFDALVAFKTASDTSQKLTTWNINSTNPCSWNGVSCIRDRVSRLVLENLDLEGSIHPLTSLTQLRVLSLKGNRFSGPVPNLSNLTALKLLFLSLNAFSGEFPATFTSLFRLYRLDLSNNNFSGEIPATVNHLTHLLTLRLDGNKFSGHIPDVNLPELQEFNVSGNRLSGDIPKSLSNFPKSSFGQNQFLCGAPIKNCTSDPTKPGSEGAIASPLVPQNNNPTTTVSSSPSSLPKTSTSTSSKSHEKGASKISPVALIAIIVGDVLVLAIVSLLLYCYFWRNYKLKEGKGSKLFESEKIVYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRFRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLRIAAGAARGVAFIHNSCKSLRLIHGNIKSTNVLLDKQGNARVSDFGLSVFAGPGPMGGRSNGYRAPEASDGRKQTQKSDVYSFGVLLLELLTGKCPSVVESAGSAYGGGVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMTCTAPSPDQRPRMTHVVKMIEELRGVEVSPFHDSLDSVSDSPSLSEDACGTSQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1873 663 MobiDBLite consensus disorder prediction 644 663 - -
Aed1g1873 663 MobiDBLite consensus disorder prediction 237 270 - -
Aed1g1873 663 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Aed1g1873 663 CDD STKc_IRAK 363 633 - -
Aed1g1873 663 MobiDBLite consensus disorder prediction 225 270 - -
Aed1g1873 663 SUPERFAMILY Protein kinase-like (PK-like) 361 630 IPR011009 -
Aed1g1873 663 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Aed1g1873 663 Gene3D Ribonuclease Inhibitor 178 223 IPR032675 -
Aed1g1873 663 SUPERFAMILY L domain-like 35 218 - -
Aed1g1873 663 Gene3D Transferase(Phosphotransferase) domain 1 433 646 - -
Aed1g1873 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 649 - -
Aed1g1873 663 MobiDBLite consensus disorder prediction 641 663 - -
Aed1g1873 663 Gene3D Phosphorylase Kinase; domain 1 337 432 - -
Aed1g1873 663 ProSiteProfiles Protein kinase domain profile. 357 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1873 663 PANTHER - 20 649 - -
Aed1g1873 663 Pfam Protein kinase domain 361 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1873 663 MobiDBLite consensus disorder prediction 516 535 - -
Aed1g1873 663 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1873 Aed-Chr1 16060445 16064757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1873 26 663 Receptor kinase-like Gene Family AT1G68400 66.921 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed1g1873 Pkinase 1.1e-34 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1873 1 16060445 16064757 Aed1g1873 1 16060445 16064757 ECH