Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1870 ATGGGGATGGGTTCCAAAATGGAAGGACCGTCTACCCCAGCAAATCGACGTGACCCATACGAGGTATTGTCCGTGACGAGGGAATCAACCGATCAAGAAATAAAAACGGCTTACAGAAAGCTTGCACTCAAGTATCATCCTGACAAGAATGCCAGCAATCCTGAAGCTTCCGAGCTATTTAAAGAGGTTGCATATTCTTATAGTATCTTGTCTGACCCAGAAAAGAGAAGGCAGTATGACAGTGCTGGATTTGAGGCACTTGATGCGGATAGCATGGACATGGAAATTGATTTGTCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAACTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAAGCTCTGAATGGAACAGTTACAGTCAGACCCCTTCCAATTGGATCATCACTCAGTGGAAAGGTAGATAAACAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGTTGAGTCAGGCATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACAAGATGCAAATGGAGGCTATGGTTTGGCATTGCAGGAAGATAGTGAGAAGACCGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACAGTGAATGCGTTAGCGATGGCCAAGGATCCTGAAGGGGCATTCTTTAAAAGGTTGGAAGGTCTTCAGCCTTGTGAAGTCTCAGAACTAAAGCCTGGCGTTCATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACGATTGAGGCAGTATGTGCAAAATCATATGAAGAAACCACCCATAAACTGAAGGACATCGAAGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCCGAATATAGAAAGCTTCTGAAACAAAGAGATGGTATCCATTCTTCCTTCACGATTGTAAAGACAACCAATATAAGTGGAAGTGGTAGCAATTTAAGCAATGGAAGTTCCAGCAAAATGAATGGTGACGAGAGCCCTGGGGAAGATGGAGGGTCAGATGGCAAGGATAAATCAGGCAAAAAGAAATGGTTTAACTTGAATCTTAGGGGTTCTGATAAGAGGTTGATTTAA 1170 0.4145 MGMGSKMEGPSTPANRRDPYEVLSVTRESTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGSSLSGKVDKQCAHFFGVTINEQQVESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGVHIFAVYGDNFFKTASYTIEAVCAKSYEETTHKLKDIEAQILRKRNELRQFEAEYRKLLKQRDGIHSSFTIVKTTNISGSGSNLSNGSSSKMNGDESPGEDGGSDGKDKSGKKKWFNLNLRGSDKRLI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1870 389 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Aed1g1870 389 CDD DnaJ 18 72 IPR001623 -
Aed1g1870 389 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 320 - -
Aed1g1870 389 PRINTS DnaJ domain signature 20 38 IPR001623 -
Aed1g1870 389 PRINTS DnaJ domain signature 75 94 IPR001623 -
Aed1g1870 389 PRINTS DnaJ domain signature 38 53 IPR001623 -
Aed1g1870 389 PRINTS DnaJ domain signature 55 75 IPR001623 -
Aed1g1870 389 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g1870 389 MobiDBLite consensus disorder prediction 341 389 - -
Aed1g1870 389 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Aed1g1870 389 Coils Coil 288 322 - -
Aed1g1870 389 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 4 320 - -
Aed1g1870 389 Pfam DnaJ domain 18 80 IPR001623 -
Aed1g1870 389 MobiDBLite consensus disorder prediction 341 356 - -
Aed1g1870 389 Gene3D DnaJ domain 4 100 IPR036869 -
Aed1g1870 389 MobiDBLite consensus disorder prediction 359 389 - -
Aed1g1870 389 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 319 387 - -
Aed1g1870 389 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 319 387 - -
Aed1g1870 389 SUPERFAMILY Chaperone J-domain 14 88 IPR036869 -
Aed1g1870 389 SMART dnaj_3 17 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1870 Aed-Chr1 16042260 16047395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1870 11 90 C2H2 Transcription Factor Family AT1G74250 42.353 2.07e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1870 1 16042260 16047395 Aed1g1870 1 16042260 16047395 ECH