Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1862 ATGTCCACAATTGCAAAGAGAGATTTGATCAGTTCTAATAATAATGAAGAAGAGAGTGAGCTGAGAAGAGGTCCTTGGACTCTTGAAGAAGACAGCTTACTCATTCACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGCTTAATTATTTGAAACCAGACATTAAGAGAGGGAACCTCACTCCACAGGAGCAACTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACTGACAATGAGATCAAGAACTATTGGAGAACAAGGGTACAGAAACAGGCACGCCAACTTAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGGTTGCTCCAAAAGATGGAACAGAACAATTCCAATTCTCCAAGCCCTCATCACTCTTCTTCTATGACACACATGATGAACTTAGGGAATTCTGGAGAAGCTTCAATGAGTTCAATGTCAAGCAGCTTCAATATTCCTTCTATGTCTTCTTCATCATCTCCTCCTCCGCCTCCACAAAGGGAATTTACTATGGATGATGCAAATCATTTTAGTACTATGTCCAACCCCATCAATCCAATCCCAGATTCCTTTCAATTTTCACAGCTGCTTGAAATTTCTGAACACCCCAAAAGTCCTCCCACCAATGTGTTGTTTGAGAACAATGTTTGCAGCTATTCAATTCAGGACAATTGCTATGTTGATACCAATAACTATGGAATGGAAGGCATAAACATGGATCCCCTTTCAGCAATGGATACTTATACTTATGACTTCCCACAGTTTGATTTTCAGACTGCAGGGAATGGATGGATGTTAGACAGCATGGGGGATGCTACTTTATGGAACATGGATGCTATGTGA 963 0.4143 MSTIAKRDLISSNNNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSNSPSPHHSSSMTHMMNLGNSGEASMSSMSSSFNIPSMSSSSSPPPPPQREFTMDDANHFSTMSNPINPIPDSFQFSQLLEISEHPKSPPTNVLFENNVCSYSIQDNCYVDTNNYGMEGINMDPLSAMDTYTYDFPQFDFQTAGNGWMLDSMGDATLWNMDAM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1862 320 Gene3D - 79 121 - -
Aed1g1862 320 MobiDBLite consensus disorder prediction 154 196 - -
Aed1g1862 320 Gene3D - 20 76 - -
Aed1g1862 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Aed1g1862 320 MobiDBLite consensus disorder prediction 154 221 - -
Aed1g1862 320 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Aed1g1862 320 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Aed1g1862 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Aed1g1862 320 SMART sant 75 123 IPR001005 -
Aed1g1862 320 SMART sant 22 72 IPR001005 -
Aed1g1862 320 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 38 47 IPR001345 GO:0003824
Aed1g1862 320 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 12 318 - -
Aed1g1862 320 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Aed1g1862 320 CDD SANT 80 119 IPR001005 -
Aed1g1862 320 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Aed1g1862 320 MobiDBLite consensus disorder prediction 1 22 - -
Aed1g1862 320 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Aed1g1862 320 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 318 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed1g1862 320 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1862 Aed-Chr1 15976136 15977772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1862 18 162 MYB Transcription Factor Family AT1G68320 81.379 2.92e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g1862 Myb_DNA-binding 3.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1862 1 15976136 15977772 Aed1g1862 1 15976136 15977772 ECH