Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1848 ATGAAATTGAGTTGTAACGGGTGTCGCATACTCCGCAAAGGTTGCAGTGAGAATTGCATAATCAGGCCTTGCCTCGAGTGGATTAACTCTCCTGAGTCCCAAGCCAACGCCACTCTTTTCCTTGCAAAGTTCTATGGTCGTACTGCCTTGCTCAACCTCATCACTGCTGCACCCCAACACCTTGCCCCAGTTGTGTTTAGATCACTGTTGTATGAGGCATGTGGGAGATTAGTGAATCCTAGTTATGGGTCACTTGGTTTATTTTGGAGTGGGGAATGGGAGCAATGTGAAGCTGCAGTTCACGCCGTGCTAACTGGCTCCAAAATTAACGGCGTGACACCGACACCTTCTTCTAGTGATCATGTTCTCTCAACATGTGATATACGCCATATGCCAAAGAGGATCAAACCCAACCCACAACTGGCTTCGGGTTCGATGTTGTGGAACTCCATTTTGCAGAGTCAGAGTCAGTTGAATCTACCTACATCTGAAAATGACTTGGACTTGGACTTGGACTTGGAACTCACTCTTAGCTTTCGTTGCCAATCGACCTATGGCAACAAAACACATTTTTAA 576 0.4635 MKLSCNGCRILRKGCSENCIIRPCLEWINSPESQANATLFLAKFYGRTALLNLITAAPQHLAPVVFRSLLYEACGRLVNPSYGSLGLFWSGEWEQCEAAVHAVLTGSKINGVTPTPSSSDHVLSTCDIRHMPKRIKPNPQLASGSMLWNSILQSQSQLNLPTSENDLDLDLDLELTLSFRCQSTYGNKTHF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1848 191 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Aed1g1848 191 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Aed1g1848 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 133 - -
Aed1g1848 191 PANTHER LOB DOMAIN PROTEIN 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1848 Aed-Chr1 15834582 15835229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1848 1 133 AS2 family AT1G68510 64.493 2.80e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed1g1848 LOB 6.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1848 1 15834582 15835229 Aed1g1848 1 15834582 15835229 ECH
Aed1g1848 1 15834582 15835229 Aed7g0199 7 1410301 1411491 ECH
Aed1g1848 1 15834582 15835229 Aed3g0057 3 502360 504157 ECH
Aed1g1848 1 15834582 15835229 Aed3g1106 3 8933959 8937533 ECH