Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1847 ATGAACTTTCTAAGTTCCACCAATGAAAAAACGGATAAGGCCCTCTCTTCTCTTATGGACCCAAAAGTTCAATCCCTTTCACTGTCAAAAAAGTGCAAACCCAAACAATCTCTCCCTGTTAAATGGACTGCAAAAGTGCTTCTTGTGGGTCACCGCTACACTCTCACACTCCCTTTTTCATCATTGCTGTATTCCCTTCCCTTCCTGTTTACCAAAAACACACTCAGATTTTGTTTTGGTGTACTGATGAGTAATTCAGCTAAGAACGCCGCAAACGCGGTTGGGGGCAAAACGGCAAGAGCATGTGACAGCTGCATAACCAAAAGGGCACGCTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCCGCCAATCCTTTGGCTCGAAGACACGAACGAGTCCGCTTGAAAACGGCGTCGTACAAGCCCACCGAGGAACAACAACCTCCCACGTGGCACACTAAGAAACCTCGAACTCCGAGACACGGGAAACAGTACTCGCGTAACAGCAACCCCTTCTTTCATTTGGTCCCTGAAGTGGGTTCCGAAGAGGCGAATTCCCTTTCCCATGACGAGAACGAGGAGCAGCTCCTTTATAGGGTCCCCATATTCGACCCTTTTGTTTCTGATGAGCTATGTGGGACTAATAACAGTTCTCCTTCTGATGTCACTGAGGTTGAAAACAACAACAATAATGGTTGTTTTTGTATTATCAATGATCAGATGGAAAACTTGCATGGGATGCTTCCTTCTGATGCAGAGCTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGTAGGGGCCTTGAAAACGAGTGTGTTGGGATCGAAGATTTGGGACTCGTTGATGCCAAAGAGGAGGAGTGTTCCGTGGCTAGTGGGAAGGTCAAGCTCGAAGAGCCTCATCATATGGATATGGATATGAATCAATCGTTTGAGTTGAGCTTTGATTATGAAACGTGTCAAGAGGTGAAGGTTTGTGATTTGGATTTGGGTAATGATGATAATGAATTAGGAGAGATCCAAGAGAATGTTGTTGATGAGATTAAAATGGAGAAGATATCCTTGCAGCTTGATTACGAGGCCGTAATCATGGCCTGGGCTAGCCAAAAGTCTCCGTGGACCACTTCTGACAAGCCAAACTTGGACCCTGATCAATGCTGGCACCAATGCATGGCAAGTTGTGGAACGGGATTTCATTACGGTGAAACGGGTGGATTTGGGATTCATCCAGTGATAATAGACGGGGGCAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAGCGCCGAACAAGGCTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAACTGAATGCAGAAAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGGACTTCCTTTGCACCACCATCATCATTTCCTTTGCTAAATAAATAA 1452 0.4601 MNFLSSTNEKTDKALSSLMDPKVQSLSLSKKCKPKQSLPVKWTAKVLLVGHRYTLTLPFSSLLYSLPFLFTKNTLRFCFGVLMSNSAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKPTEEQQPPTWHTKKPRTPRHGKQYSRNSNPFFHLVPEVGSEEANSLSHDENEEQLLYRVPIFDPFVSDELCGTNNSSPSDVTEVENNNNNGCFCIINDQMENLHGMLPSDAELAEFAADVESLLGRGLENECVGIEDLGLVDAKEEECSVASGKVKLEEPHHMDMDMNQSFELSFDYETCQEVKVCDLDLGNDDNELGEIQENVVDEIKMEKISLQLDYEAVIMAWASQKSPWTTSDKPNLDPDQCWHQCMASCGTGFHYGETGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFAPPSSFPLLNK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1847 483 Pfam CCT motif 427 469 IPR010402 GO:0005515
Aed1g1847 483 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 86 475 - -
Aed1g1847 483 CDD Bbox1_BBX-like 101 144 - -
Aed1g1847 483 ProSiteProfiles CCT domain profile. 427 469 IPR010402 GO:0005515
Aed1g1847 483 ProSiteProfiles Zinc finger B-box type profile. 97 144 IPR000315 GO:0008270
Aed1g1847 483 Pfam B-box zinc finger 99 142 IPR000315 GO:0008270
Aed1g1847 483 SMART bboxneu5 97 144 IPR000315 GO:0008270
Aed1g1847 483 MobiDBLite consensus disorder prediction 147 178 - -
Aed1g1847 483 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 86 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1847 Aed-Chr1 15831913 15834014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1847 88 469 C2C2-CO-like Transcription Factor Family AT1G25440 45.433 3.54e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed1g1847 zf-B_box 1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1847 1 15831913 15834014 Aed1g1847 1 15831913 15834014 ECH