Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1839 ATGGCTTCTCTCCCCACTCTTTCATTCTCTTCATCTCTCTCCACCACCGCCAATCTCCTCCCATGTCGCCGCTTCATCGCATTCCCACGCCGCCGCCGCTTCTCCGTGCAAGCCAAGATCCGCGAAATCTTCATGCCGGCACTCAGCTCCACCATGACCGAGGGTAAAATCGTCTCCTGGATCAAATCCGAAGGCGACAAGCTCTCCAAGGGTGACAGCGTCGTCGTCGTTGAATCCGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCATCCTCGCCGCCATCGTCGTCGCCGACGGCCAAACCGCCCCCGTCGGAGCCGCCATCGGTTTGCTCGTCGATTCTCCCGATGAAGTCGCCGAAGCCAAAGCCAAAGCCGCCAAATCAGCCCCATCTGCCTCTCCCACCGCCGCCACTCCCTCCGACCCTGCTCCGGCGACTCCTCCTCCACCTCCTCCGCCGGCCAAGTCCGTTTCAGACGGTCCGTCGAAGATCGTAGCCACGCCTCAGGCTAAGAAGCTTGCGAAGCAGCACAAGGTCGACATTGCAACGGTCGTCGGAACCGGTCCGTTTGGTAGAATTACTCCGGCGGACGTGGAGACTGCCGCCGGAATCGCGCCGTCTAAGAGCAATGTAGCTCCGGTGGCGAGTCCTTCTCCGGCGGCTCCAGCTCCTCCAGCAAAAGCTGCTCCCGGTTCTGCTGCACCGCCTCCGATTCCGGGTTCCAGTACTGTTCCCTTCACTACGATGCAATCTGCGGTTGCGAAGAACATGATGGAGAGTCTCTCTGTGCCTACGTTCCGGGTTGGGTACCCTGTCACTACCGACGCGTTGGATGCTCTTTATGAGAAGGTGAAACCGAAGGGTGTGACTATGACGGCTATTTTGGCTAAGGCTGCTGCAATGGCACTTGTTCAGCACCCGATTGTCAATGCTACCTGCAAAGACGGAAAAAATTTCGTGTATAACAGTAACATCAATGTTGCTGTTGCTGTGGCAATCAATGGTGGTTTGATCACCCCAGAGCTAGTGGATAAAGCTCGTGCAAAGCAGTTGCAACCTCAAGAGTATAATTCAGGAACTTTCACGCTTTCCAATTTGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTTCCACCAGGCCAGGGTGCTATCATGGCTGTTGGAGCATCAAAGCCTGCTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGGTGAATGTAACAGCTGATCATCGGATTATTTATGGGGCTGACTTGGCCACTTTCCTCCAGACATTCTCAAAAATCATTGAAAACCCAGAAAGTCTGACATTGTAG 1344 0.5454 MASLPTLSFSSSLSTTANLLPCRRFIAFPRRRRFSVQAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGDSVVVVESDKADMDVETFYDGILAAIVVADGQTAPVGAAIGLLVDSPDEVAEAKAKAAKSAPSASPTAATPSDPAPATPPPPPPPAKSVSDGPSKIVATPQAKKLAKQHKVDIATVVGTGPFGRITPADVETAAGIAPSKSNVAPVASPSPAAPAPPAKAAPGSAAPPPIPGSSTVPFTTMQSAVAKNMMESLSVPTFRVGYPVTTDALDALYEKVKPKGVTMTAILAKAAAMALVQHPIVNATCKDGKNFVYNSNINVAVAVAINGGLITPELVDKARAKQLQPQEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPAVLADKDGFFSVKNKMLVNVTADHRIIYGADLATFLQTFSKIIENPESLTL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1839 447 MobiDBLite consensus disorder prediction 220 245 - -
Aed1g1839 447 Gene3D - 346 446 IPR023213 -
Aed1g1839 447 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 168 205 IPR004167 GO:0016746
Aed1g1839 447 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 3 447 IPR045257 GO:0006086|GO:0045254
Aed1g1839 447 MobiDBLite consensus disorder prediction 212 246 - -
Aed1g1839 447 ProSiteProfiles Biotinyl/lipoyl domain profile. 40 115 IPR000089 -
Aed1g1839 447 SUPERFAMILY Single hybrid motif 39 134 IPR011053 -
Aed1g1839 447 Pfam e3 binding domain 167 202 IPR004167 GO:0016746
Aed1g1839 447 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 344 446 IPR001078 GO:0016746
Aed1g1839 447 MobiDBLite consensus disorder prediction 125 175 - -
Aed1g1839 447 Gene3D - 165 205 IPR036625 GO:0016746
Aed1g1839 447 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 3 447 - -
Aed1g1839 447 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 65 94 IPR003016 -
Aed1g1839 447 MobiDBLite consensus disorder prediction 143 160 - -
Aed1g1839 447 CDD lipoyl_domain 42 114 - -
Aed1g1839 447 SUPERFAMILY CoA-dependent acyltransferases 245 446 - -
Aed1g1839 447 Gene3D - 228 345 IPR023213 -
Aed1g1839 447 Gene3D - 35 140 - -
Aed1g1839 447 Pfam Biotin-requiring enzyme 42 111 IPR000089 -
Aed1g1839 447 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 161 204 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1839 Aed-Chr1 15744264 15748477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1839 7 447 Acyl Lipid Metabolism Gene Families AT3G25860 69.574 0.0 590
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1839 1 15744264 15748477 Aed1g1839 1 15744264 15748477 ECH