Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1836 ATGGCCACCGATGCCCGTGACTCGCGTCGCAAGAATCGTCGATCATCCTCTCCGGAGGACGTTGACAGATCCTCGAAGCGCCACAAGCACCGCCACCACAGCCACCGCCACCGCCATGGAAGCAAAAAGCGCGACGAAGATATTGAATTCGATGATCGAACAATTGCTGCTGCTCCTTCTCCAACTCCTCACAGACATCTCCCTGACGACGATGTGGAGGAGGGAGAGATCCTTGAAGATGAGGCTCTCGACGGCGAGGCTGGGAAAAAGGAGACGGAATCTGATGTTGAACCTGGTGAAATCAAGGTGACTGGAGATCGAGGTGTTCGATCTGATAATCAAAATTCGGGACACCTCACTAAAAATTCAGAAACTAGAAATGAGGACATTAGGGATGATAAGTTTACTAGTCCTGCATCTGATGCAGAAGATGATGCCTCTCCTAATCGTTCAAGTGCTGAGACTCGAGATGAAAAGCATGCTCAAGCTTGTACAGATGGTGTGGGAAATGGTTGTGTGGATCCTAAATCTTCCAAAGGGGATAAGTGGTGGAATGGGGAAGTTGGACATAAAGGGAATGAGAAACTAAAAGGTGACTTTGATGACGAAACACTGGAGGCTAATGCGAGGAAAGCATATTACCATAGGAATTCATCCTCCGAAAGTGGAGGAGAAAAGCATAGAATTTCAGGAAGTTCTCCTTCTCATGGTAGATATAGGAGTCGATCAAGGTCAATTGGTCACACTAGAGACAGGTCTCGTTCTCGTAGTATCATAGAAGAATATGCCCATTCCAAGAGAAGGCGCTCTGACTATGACCATGATGATGAAAGAGTGAGGGCATGTGGAAGGGAGCATGGTCATGTCAGTGTGGTAGATGATAGAAGGGAGTACAGTACCAAATATCACAATCAGGAAGCCTGGGATAGAGCTAGGAGTAGGGATAGAGATATGGATAGAGACTTGCATAGAGAAAACAAACGAGAGGAAACAAGCAAGGGTAAGGAGATTGAGTGGGAACACAAAAGGGGAAAGGAGCGTGAAAGGAGCCGTGAGGGGTATAGGAGGGATGTAGAAAAAGATAGGAGCAGGGAAAGGGAGGAGGATAGAGACAGGAGACAAGAAAAGGAAAGAGATAGGAGTTGGGAGACAGTGTTTGAGAGGGATAGAAGAAGGGAAAATGAAAGAGATAGAAGTAGGGACAGAACAAGAGGTGGCAAGAGAGATAGAGACCTGGGGAATGAAAGGGATGGAAAGAATCGGGAAAGGGATAATATTAAGGAGAGAGAAAGGCGAGATGATAGATATAGACACAAAGATAGAGACACTGCAAATGGTAAAGATAGGCATCTGCGTCGTGAAGATGTTAATGACAATGGAGATAGATATAGAAAACATTCAAGGCATGAAGAAAATGAATACCACTGGGAAAGAAAAAGAAATTCTGATAATCATGTAAAGGTTTTTAACTCAATGGGAAATACTGCAGAAGTGGATAAACACAAACTAACAAGAAGTGAGGTTGAACCAGATGACTTGGAGGAGGATACTTTGCAATTACCTGAGCAAGAAGAGGAAGACCTCAACAGGATCAAAGAAGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTACAAGAAGTGGCTGGAAATGAAGGAAAAGACAAGGATGCAGACGATCCTACTGACATCTCTGAAGCACATGATGCTAATTATGTGGAGCCGTCATTTGCTGTTGGGAAATCTCCTGAAAACGTGAATGTTGCTTCTAAGAAGATTTCTCTCACTGGAGGCTTGGGAGAGGGTACTCCAAAGAGTGAAAGGTCGGAGGACAAGTTTTGTGATGATATATTTGGTGAGACGCCAACGGGAGTTCGGAAATCAGGAAAAGGAGATGGTTTACTGGTTGAGAGGGTTGGCCAACATGACAATTGGGACGATGCAGAGGGTTATTACAGCTATCGTATTGGTGAAATACTTGATGGCAGATATGAAGTCACTGCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTAAAGATGGGAAATGGTGAGCCAGAAGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGACGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATAGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCACTGTGATATAAAGCCAGATAATATGTTGGTAAACGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGCCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGACATATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTTTGAGTTGTATATAGGGAAGGTTCTTTTTCCAGGGCTTACAAACAATGACATGCTAAAGCTTCACATGGAACTGAAGGGCCCTTTCCCAAAGAAGATGCTACGTAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGGCTGATTCTCAACATTAAGCCAAAAGATATTGGGACACTCATCACTGGCTCTCCTGGGGAGGATCCAAAAATGTTAGCTAACTTTAAGGATCTTCTGGAAAAAGTTTTTGTCTTGGATCCAGACAAGAGGCTGACAGTGTCACAAGCTCTGAACCATCCATTCATCACTGGCAAGTGA 2973 0.4319 MATDARDSRRKNRRSSSPEDVDRSSKRHKHRHHSHRHRHGSKKRDEDIEFDDRTIAAAPSPTPHRHLPDDDVEEGEILEDEALDGEAGKKETESDVEPGEIKVTGDRGVRSDNQNSGHLTKNSETRNEDIRDDKFTSPASDAEDDASPNRSSAETRDEKHAQACTDGVGNGCVDPKSSKGDKWWNGEVGHKGNEKLKGDFDDETLEANARKAYYHRNSSSESGGEKHRISGSSPSHGRYRSRSRSIGHTRDRSRSRSIIEEYAHSKRRRSDYDHDDERVRACGREHGHVSVVDDRREYSTKYHNQEAWDRARSRDRDMDRDLHRENKREETSKGKEIEWEHKRGKERERSREGYRRDVEKDRSREREEDRDRRQEKERDRSWETVFERDRRRENERDRSRDRTRGGKRDRDLGNERDGKNRERDNIKERERRDDRYRHKDRDTANGKDRHLRREDVNDNGDRYRKHSRHEENEYHWERKRNSDNHVKVFNSMGNTAEVDKHKLTRSEVEPDDLEEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQVQEVAGNEGKDKDADDPTDISEAHDANYVEPSFAVGKSPENVNVASKKISLTGGLGEGTPKSERSEDKFCDDIFGETPTGVRKSGKGDGLLVERVGQHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKMGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLTYDHPLDIWSVGCCLFELYIGKVLFPGLTNNDMLKLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKTIKRLILNIKPKDIGTLITGSPGEDPKMLANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1836 990 MobiDBLite consensus disorder prediction 82 107 - -
Aed1g1836 990 SMART serkin_6 672 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1836 990 MobiDBLite consensus disorder prediction 26 40 - -
Aed1g1836 990 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 342 990 - -
Aed1g1836 990 SUPERFAMILY Protein kinase-like (PK-like) 659 989 IPR011009 -
Aed1g1836 990 MobiDBLite consensus disorder prediction 1 25 - -
Aed1g1836 990 Gene3D Phosphorylase Kinase; domain 1 643 731 - -
Aed1g1836 990 Gene3D Transferase(Phosphotransferase) domain 1 732 988 - -
Aed1g1836 990 PANTHER DUAL SPECIFICITY PROTEIN KINASE 342 990 - -
Aed1g1836 990 MobiDBLite consensus disorder prediction 180 210 - -
Aed1g1836 990 MobiDBLite consensus disorder prediction 550 573 - -
Aed1g1836 990 MobiDBLite consensus disorder prediction 1 478 - -
Aed1g1836 990 CDD STKc_PRP4 671 987 IPR044092 GO:0004674|GO:0006468|GO:0045292
Aed1g1836 990 Pfam Protein kinase domain 674 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1836 990 ProSiteProfiles Protein kinase domain profile. 672 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1836 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Aed1g1836 990 MobiDBLite consensus disorder prediction 244 478 - -
Aed1g1836 990 MobiDBLite consensus disorder prediction 122 140 - -
Aed1g1836 990 MobiDBLite consensus disorder prediction 147 163 - -
Aed1g1836 990 MobiDBLite consensus disorder prediction 213 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1836 Aed-Chr1 15729538 15739700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1836 625 989 MAP Kinase Gene Family AT2G18170 30.709 6.59e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Aed1g1836 Pkinase 4.7e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1836 1 15729538 15739700 Aed1g1836 1 15729538 15739700 ECH