Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1830 ATGTTTCAGAGAGGAACCACTAACGCCACCGTGTCCATGGCGAACCAGCAGCACGTTGAGAACTGGGCAGATGATAGCCAACACACTGAAGATACTTGCACAGATATAGACGCCGATGATAAAAACCAAACTATACGTAGGCTAGCTCAGAATCGGGAGGCTGCGAGGAAGAGTCGGTTGAGGAAAAAGGCATACGTGCAACAATTGGAGAATAGTCGAGTTAAGCTTGCGCAATTAGAGCAAGAACTTCAACGGGCACGTCAGCAGGGTGCATCTGTTGCCACTGGAATCACAGGGGATCGCAGTCTTGTTGGAAATGGTGCTTTAGCTTTTGACATGGACTATGCACGTTGGGTTGATGATCATCAACGGCTTATCAATGATATAAGATCAGCTATGAATTGTCAAATTGGTGAAAATGAACTGCACCTTCTTGTAGATGGAGTGATGACACATTATGATGAATTATTTAGGTTGAAGAGCATTGGGGCAAAGGCAGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCAGCAGAAAGATGCTTCATATGGCTCGGTGGATTTCGTTCATCGGAACTTCTCAAGATAGTTAGAAACCAGCTGGAGCCGTTAACCGAACAACAATTGATGGGGATATACAATTTGCAGCAGTCTTCCCAGCAGGCCGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTCTCAGAGACACTTTCCTCCTCTTCCTTAGGTCCCTCTGCCTCTGGAAATGTTGCTGAATACATGGGCCAAATGGCTGTTGCATTGGGCAAGCTTGCCACACTTGAGAGTTTCCTTCATCAGGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACAACGTTCCAAGCTGCTCGTGCTCTCCTTGTGATAAATGATTACGTTTCACGCCTTAGAGCTCTTAATTCATTATGGCTAGCGTGCCCTAGAGAGTACTAG 987 0.46 MFQRGTTNATVSMANQQHVENWADDSQHTEDTCTDIDADDKNQTIRRLAQNREAARKSRLRKKAYVQQLENSRVKLAQLEQELQRARQQGASVATGITGDRSLVGNGALAFDMDYARWVDDHQRLINDIRSAMNCQIGENELHLLVDGVMTHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSSSLGPSASGNVAEYMGQMAVALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1830 328 Pfam bZIP transcription factor 43 81 IPR004827 GO:0003700|GO:0006355
Aed1g1830 328 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 46 61 IPR004827 GO:0003700|GO:0006355
Aed1g1830 328 Gene3D - 42 95 - -
Aed1g1830 328 Coils Coil 62 89 - -
Aed1g1830 328 Pfam Seed dormancy control 126 200 IPR025422 GO:0006351|GO:0043565
Aed1g1830 328 SMART brlzneu 37 92 IPR004827 GO:0003700|GO:0006355
Aed1g1830 328 PANTHER TRANSCRIPTION FACTOR TGA9 23 327 - -
Aed1g1830 328 ProSiteProfiles DOG1 domain profile. 108 324 IPR025422 GO:0006351|GO:0043565
Aed1g1830 328 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 23 327 - -
Aed1g1830 328 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 41 85 IPR004827 GO:0003700|GO:0006355
Aed1g1830 328 SUPERFAMILY Leucine zipper domain 45 86 IPR046347 GO:0003700|GO:0006355
Aed1g1830 328 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1830 Aed-Chr1 15702418 15705050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1830 33 327 bZIP Transcription Factor Family AT1G68640 70.667 1.42e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aed1g1830 DOG1 1.7e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1830 1 15702418 15705050 Aed1g1830 1 15702418 15705050 ECH