Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1383 ATGCAGGATCCAACGTTGTTCCAACCCTTGAAACCCCACTTTCCTGAACAGGAACAACTTAAATGCCCCCGCTGTGACTCCCCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCACGTCATTTCTGCAAAAACTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCCATTGGTGGTGGAACCAGAAAGAACACTAAGCGATCATCTTCCTCCACCAACACCAAACGCTCTTCCCCAGTTTCTTCCTCTGCACCCGCTCCAGAACCCGATCTGACCCGCCTTGACCCCAGCCCGGTTGCTGCTGCTGCTGCTGCTGTCAGTTTCAGTTCCCTTTTGGCATCAAATGCCCATTCGGGTTTCGGGAACCTCTTGGAGGGTTTGAATTCAAGTGGGTCTAATATGAAAACTCTGCAAATGGAAGATTTTGGGGAAAATGTTAGTTCGGCTCCAGTGCCGGATCCGGGTTCGGGTCGAAATCCCGGGCTGGAGATGCAAAGCAATGGGAATGCAGAGACTTTTCTGAGTTTGCAAAATGGTGATTCAAGCTGTTGGAATAGTACTAATGGGTGGTCTAACCTTGCCATTTTCACTCCTGGGTCAAGCTTTCAGTAA 636 0.4953 MQDPTLFQPLKPHFPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPIGGGTRKNTKRSSSSTNTKRSSPVSSSAPAPEPDLTRLDPSPVAAAAAAVSFSSLLASNAHSGFGNLLEGLNSSGSNMKTLQMEDFGENVSSAPVPDPGSGRNPGLEMQSNGNAETFLSLQNGDSSCWNSTNGWSNLAIFTPGSSFQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1383 211 MobiDBLite consensus disorder prediction 69 93 - -
Aed1g1383 211 MobiDBLite consensus disorder prediction 152 174 - -
Aed1g1383 211 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Aed1g1383 211 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 211 - -
Aed1g1383 211 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Aed1g1383 211 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 211 IPR045174 GO:0003700|GO:0006355
Aed1g1383 211 MobiDBLite consensus disorder prediction 61 103 - -
Aed1g1383 211 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1383 Aed-Chr1 12763856 12764491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1383 11 127 C2C2-Dof Transcription Factor Family AT1G51700 57.576 5.64e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed1g1383 zf-Dof 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1383 - - gmx:100798927 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1383 1 12763856 12764491 Aed1g1383 1 12763856 12764491 ECH
Aed1g1383 1 12763856 12764491 Aed2g0280 2 1815836 1816447 PCT