Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1212 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAGCAACAACATCAAGCAAATGGAAATAATAGTCCTCAGCTGCTTCCGCCGCTGCCACCGGCCACTCACCACCTGGGTGGTGAGGCGAGCCAAATCCGGCCCGGTCCGATGATGACGGATCGGGCCAAGATGCCGGCCCAGGAAGGTGTTATGAAGTGTCCTCGGTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCCCAGCCAAGGCACTTTTGCAAGACATGTAGGCGCTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCCGAAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTTCTACTGAGAAACCATCACTTGATCCCAATTCCACAAGTGCAGTCCCTGAGCTTATTGGTCGATTCCCTCAACCCTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGTGTAGGGATAGGGAACACAGGTAGTGTTAACTTGCGTGAGATTCAACAAGCACAAAACGGTACTTCTCATATGGGGTTTCAAATTGGAGGTTCAGGAGTGGAGCAGTGGCGGTTTCAGCAGTTTCCTTTCTTGAATGGTTTTGATCAGTCAACTTCTGCTGGCGCTGTTTCTTCCTACCCTTTTCAAAGTGAAAGTGTTGAAGGTTTGGATGGAGATATAGCCGCAGCCTCTAGGGTTACTCAGCTGCCACCAAGGTTAAGATAG 774 0.4922 MVFSSIPVYLDPPNWQQQQHQANGNNSPQLLPPLPPATHHLGGEASQIRPGPMMTDRAKMPAQEGVMKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSTEKPSLDPNSTSAVPELIGRFPQPFMASLQSMNRYGVGVGIGNTGSVNLREIQQAQNGTSHMGFQIGGSGVEQWRFQQFPFLNGFDQSTSAGAVSSYPFQSESVEGLDGDIAAASRVTQLPPRLR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1212 257 MobiDBLite consensus disorder prediction 111 146 - -
Aed1g1212 257 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Aed1g1212 257 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 238 - -
Aed1g1212 257 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 238 IPR045174 GO:0003700|GO:0006355
Aed1g1212 257 Pfam Dof domain, zinc finger 66 121 IPR003851 GO:0003677|GO:0006355
Aed1g1212 257 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1212 Aed-Chr1 11691854 11694220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1212 1 123 C2C2-Dof Transcription Factor Family AT2G37590 54.795 1.94e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed1g1212 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1212 - - gmx:100775899 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1212 1 11691854 11694220 Aed1g1212 1 11691854 11694220 ECH
Aed1g1212 1 11691854 11694220 Aed5g0405 5 2874613 2876597 PCT