Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1155 ATGGATCCGTCTAGTGGACAACCCCAGCAAATGTCTAGCCAGTCAGTGGAGAAGACGCCAAAGCCTCATCCAGAACAAGCTCAGAAATGCCCAAGATGTGACTCCACCAGCACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACAAAAGGAGGAACATTGAGGAATGTTCCTGTGGGAGGAGGATGCCGGAAAAAGAGATCATCATCATCATCATCAAAGAGGGCTCATGATCAAACATTCTCACCCAATCTTAACCCACACCCTCATTTGTCTTATGACTCCAATGACTTAACTCTAGCATTAGCTAGGTTTCAAAAACAATCAAGTGGGCAATTGGGTTACAATGATCATGATTTTTCAACTTTGGGGAATCCCACCACAGTCTCCTTTTGTGACATTCTTGGCAATCACTCCTCAACAAACCCTTCATTAGTTTTGGACGCTATTCGAACTCATGGGTTCCTTGAAACACAAAATCATCTTCAGAATTTGTATTCTGTGTATGGAAATGGGGACTTGGGGGAGGTGGATAATGGCAATTCTGGTGGGGTTGGAGTTAGTGAAGAGATGATGCTCCCTTATGATGATCAAGTGATAATGAGCAATGCAACCACTCAATCAGTGATGAGTGTAATGAAGCAAGAAATGTGTAGTGAAAAGAGGGTGTTGGGGGGTTTCCCATGGCAGCTTAATAATGCAGACACTAACGTTGGTGAACTTGATTCAGGAAGAGCAATTACAAGTTGGAACAGTTTCACAAATTCTTGGCACGGGTTTCTCCAAAGTCCCCTAATGTAG 843 0.4259 MDPSSGQPQQMSSQSVEKTPKPHPEQAQKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSSSKRAHDQTFSPNLNPHPHLSYDSNDLTLALARFQKQSSGQLGYNDHDFSTLGNPTTVSFCDILGNHSSTNPSLVLDAIRTHGFLETQNHLQNLYSVYGNGDLGEVDNGNSGGVGVSEEMMLPYDDQVIMSNATTQSVMSVMKQEMCSEKRVLGGFPWQLNNADTNVGELDSGRAITSWNSFTNSWHGFLQSPLM 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1155 280 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Aed1g1155 280 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Aed1g1155 280 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 14 279 - -
Aed1g1155 280 MobiDBLite consensus disorder prediction 1 21 - -
Aed1g1155 280 MobiDBLite consensus disorder prediction 88 106 - -
Aed1g1155 280 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 279 IPR045174 GO:0003700|GO:0006355
Aed1g1155 280 MobiDBLite consensus disorder prediction 1 33 - -
Aed1g1155 280 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Aed1g1155 280 MobiDBLite consensus disorder prediction 73 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1155 Aed-Chr1 11261063 11262822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1155 26 280 C2C2-Dof Transcription Factor Family AT2G28510 38.628 4.13e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed1g1155 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1155 - - gmx:778104 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1155 1 11261063 11262822 Aed1g1155 1 11261063 11262822 ECH
Aed1g1155 1 11261063 11262822 Aed5g0474 5 3449897 3452904 PCT