Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0774 ATGGGAATGAAGAGCACTGGGGGAGAAATTGTTCAAGTCCAAGGTGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGTAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAGGCCGTGGATTGGCTCATAAAGAAGGCTCAGAATGCTATTGATAAGCTTGCTGAGCTTCCTCCATGGCACCCTACTCCTAACACTACTGCAGATGCTGAGAACAACAACAATAACAATAACAATGCTGCAGGGTCAAGTGACATGGGAATTGCAGAACAATCTGAGTCCTCTGGTTACAATTTTCAGCTTCAAAGGCAATTAGGTGAGGAGCATGACAACCACCATTCAGCTTTCATTCCCTCACCTATTGACAATGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCAAACGCAAACACCTTCCAATGACCAAACCCTCTTCTCAGCTGGCTCAACTCAAGTGGGGTTTGAGTCCAATTACCCCAGGATTGTGACTTGGAACAATGATGCAAGCACCACAGGTATGAATATGAACAGAACCGGGTTCATGGTCAATTCACCATCACTTCTAAGCCAAGGTGGTGGTTCTGCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATCCCAATGGCTTCATCAGAACATCACAAGTCACAAACTATTCAACAAGCTTCCATCTTTGGCAGCAGGTTTCTCTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGAGCCATCATGGAGTTGGTACCGACAAGCCATCATCTTCTTCTCCTAATTCTCATCATTGA 1023 0.4633 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQNAIDKLAELPPWHPTPNTTADAENNNNNNNNAAGSSDMGIAEQSESSGYNFQLQRQLGEEHDNHHSAFIPSPIDNDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDQTQTPSNDQTLFSAGSTQVGFESNYPRIVTWNNDASTTGMNMNRTGFMVNSPSLLSQGGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHKSQTIQQASIFGSRFLSDALPGFCIPARIQGEDESHHGVGTDKPSSSSPNSHH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0774 340 Pfam TCP family transcription factor 23 128 IPR017887 -
Aed1g0774 340 MobiDBLite consensus disorder prediction 93 123 - -
Aed1g0774 340 MobiDBLite consensus disorder prediction 319 340 - -
Aed1g0774 340 PANTHER TRANSCRIPTION FACTOR TCP4 2 340 - -
Aed1g0774 340 MobiDBLite consensus disorder prediction 84 123 - -
Aed1g0774 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 340 IPR005333 GO:0003700
Aed1g0774 340 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0774 Aed-Chr1 8698547 8699569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0774 8 340 TCP Transcription Factor Family AT3G15030 41.935 1.60e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aed1g0774 TCP 1.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0774 1 8698547 8699569 Aed1g0549 1 7031966 7034251 ECH
Aed1g0774 1 8698547 8699569 Aed5g1237 5 11238065 11239736 ECH
Aed1g0774 1 8698547 8699569 Aed1g0774 1 8698547 8699569 ECH
Aed5g1237 5 11238065 11239736 Aed1g0774 1 8698547 8699569 PCT