Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0419 ATGGGGTTGTTCACTTGTTTGGTTGTGTTTTTCCTGAAATGGGTGTTGTTTGTTGAATATAAAATTGGGGCAGTGGGCACACAAAGGTTTGAATGGTGGGGAATGGGTTGTGCTGCACTTGAAGTTTCTGTTTACCCAGATGCTGATTACGAAACTGGACATGAGTATGCTTGTGGGGATATGCTCGAACCGCGAGAATCTGATATACCTGTCCTGTTTCTGGTCCTGGTTGTGCTTCCCTTGGTGGCTTACATCTTACTTGGAAAATGGAGTGAAACTTCTAAGAAGAGAGATAGGATAAATTTGCTTGCCCATTTGGCTGCCGAAGAAGCTCTGAGAGCTGAAGAAATGGCCGTGGCTGATGTAATTCCTCCATTGTCTGCTTCAAAAAGTGAGCATCATGTGTGTGCTAGGTGCTCTGCTCCAGCCAGAACTCGATGCTCCAGATGCAAATTTGTTAGATATTGCTCTGGAAATTGTCAAATAATCCATTGGAGGCTAATTCACAAGCAAGAATGCCAGCAACTGGAACCTCATAGATCAAGCTCATTTCCTATGGCTGTTTCAGTTGAGGAATTTGGTCATGGGAGTTACTTTTATGAAAATTTGAACAACCAGTTCTTAGGTCCCTCTTTGAAGCAGACTTTAAGGGAGAGTGCACCTTTGGACAATTTGGTTCACCCTCTGACAGGCACTGCTGCTCCTGCTACAACTGATTTTTCCATATTTAATAATTTCCAACCTTCTGCTTTTGAAAGAACTTCCCATAAATCCAACAGAGAAACATTGAGAAGAGATAATGGGTCTATATATGAATCTTCTATTGAATCTTCTGATTATAAAGCTACCAGTTCTCTCTCAAGTGTGGTTCCAAAGGAGGCGTTTATGAGACAGAAGTCAAGAAATAGCAATGATTCTGTGTTGGAGGAAGAAATTTCAAATGTCAATTCTGGTGGCTTAGGAGTTTATATTAACAGACTTGATGCATCAAAAAACACAACCCAAGAGGATGACAACCATCAAAGTCCATATGGAAATGCATCTGTAACAAGACACAAATATGGACGCCCAAGTGTGTCAAGTGCTGCAAACAATGATAACAGTATAGATGAATTTGAAACAGACATCACTGCCAAAGGTGTAGTCAAAGGGGGGAATTATCATTCTGATGAAGCAGCACAATACAAACGCCCTTCTGAAACGACAATCAAAGGAAGTGTGAAAGCTAAAAAGATATTACATACTCCCAAGACCAAATCTTCTAAATCACCAAAGTCAACATCAAAGACATCAACGGACTTTTGTTGCTCAGAAATAGAGAAGAAAGGGAAAACTGCAGATGAACTAAAAGTTGCTGGAAATAGTGATACCATCCCTTTACATGGTAATGGTAGCAATGGGGTTGCAAGCACTGGAATTATGAAAATGATGGGCTTGAGGAAATCGACAAAACCTCCTCCTCTAGCATCCACAGAAGGCATTGATGTAAAGTGCAAGAAGGTGAAGAAGATAAAGATGTTGTTTCCTTATGATGAATTTGTAAAGATTTTTCAAAGTGATGTCTTTGGCATATGCCCCAGGGGCCTGTTAAATTGTGGGAACAGTTGCTATGCCAATGCTGTCTTGCAGTGCTTAACTTCTACAAAGCCTCTAGTCGTCTATTTGCTTTATAGATCACACTCAAAAGCTTGTTGTGCTAAAGATTGGTGTCTCATGTGTGAATTAGAGCAACACATAATGACTTTAAGAGAAAATGGGGCTCCTCTATCTCCTAGTAGGATACTTTGGCATATGCGGAGCATTAACTGTCACATGGGTGAAGGAAGTCAGGAAGATGCCCATGAATTTTTAAGCTCTATGTCTTCAACAACAGTTAAGTGTTTGAATTGTAATCACGAATCAGAAAGGTATGAGAACATTATGGACCTGAACTTGGAGATATTGGGTTGGGTTGAGTCACTGGAAGATGCACTGACTCAGTTTACTTCTCCTGAAGATTTGGATGGAGAGAATATGTACAGATGTGGAAGGTGCACATCATATGTTAAAGCTAGAAAGCAACTGAGCATACACGAAGCTCCTAACATCTTGACTATAGTTCTGAAGAGATTTCAGGAAGGAAGATATGGGAAAATTAACAAGTGCATAACTTTTCCTGAAATGCTGGATATGATTCCTTTCATGACTGGGACGGGTGATATTCCGCCACTTTACATGCTTTATGCTGTTGTTGTGCACCTGGACACACTAAATGCATCTTTCTCTGGACACTATGTTCAGCCAGTGCTAGTTAATCAGGTCATGTCAGAAGGAGCATATATCCTATTCTACATGAGGTCTTATCCCCGTCCTCCGGTAGAACATACTGTGAAAGCCATGCAGCAACCAGTCTATGATTCTTCAAAGCACAGTCCAATGGAAATGCTGAAACCGAATAAACCAGCACATAGCAGGCATCACAGTCAGTCTTTTGTCCTAGAGCCATCACCCAATGCCAGGCCAGAAATTGCCACTCGTGTCATCGACACCACCAACGGCTTCCTCAGAAAAAGCACTAACAGAAACGCCCTGCCAGTGACGCAAACCTACGCCGAGAACATCAGGCGCGGCGAGTTTTCGGATGCCACATCAAGTGACTGGTCCCTTTTCACAAGCTCAGACGAGGCTTCCTTCACAACAGAGAGCACCAGGGACTCCTTCAGCACTGTGGACTATGGTGATTCAGGCAACATGGATCCAATTTCATCCATCTTCAACTACACCCCAGAAAGGTCCTACATGAAGTTTTCACATAGCAGACCAGTTACAAGGGTCATCTCTCAAAAGGGTCATGTTGAACCAGTAAAGAGAATTGATCATTCCAAAAGGGTCAACCATTCTTCTTCAAATGAACATCCACAAAATGGGAACTGTGGCATGTATGTACATTATGGGAGTAATCCTGTGTGTGGTATTACTCGGACTTCTTCTAGTCAGTAG 2979 0.4196 MGLFTCLVVFFLKWVLFVEYKIGAVGTQRFEWWGMGCAALEVSVYPDADYETGHEYACGDMLEPRESDIPVLFLVLVVLPLVAYILLGKWSETSKKRDRINLLAHLAAEEALRAEEMAVADVIPPLSASKSEHHVCARCSAPARTRCSRCKFVRYCSGNCQIIHWRLIHKQECQQLEPHRSSSFPMAVSVEEFGHGSYFYENLNNQFLGPSLKQTLRESAPLDNLVHPLTGTAAPATTDFSIFNNFQPSAFERTSHKSNRETLRRDNGSIYESSIESSDYKATSSLSSVVPKEAFMRQKSRNSNDSVLEEEISNVNSGGLGVYINRLDASKNTTQEDDNHQSPYGNASVTRHKYGRPSVSSAANNDNSIDEFETDITAKGVVKGGNYHSDEAAQYKRPSETTIKGSVKAKKILHTPKTKSSKSPKSTSKTSTDFCCSEIEKKGKTADELKVAGNSDTIPLHGNGSNGVASTGIMKMMGLRKSTKPPPLASTEGIDVKCKKVKKIKMLFPYDEFVKIFQSDVFGICPRGLLNCGNSCYANAVLQCLTSTKPLVVYLLYRSHSKACCAKDWCLMCELEQHIMTLRENGAPLSPSRILWHMRSINCHMGEGSQEDAHEFLSSMSSTTVKCLNCNHESERYENIMDLNLEILGWVESLEDALTQFTSPEDLDGENMYRCGRCTSYVKARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMIPFMTGTGDIPPLYMLYAVVVHLDTLNASFSGHYVQPVLVNQVMSEGAYILFYMRSYPRPPVEHTVKAMQQPVYDSSKHSPMEMLKPNKPAHSRHHSQSFVLEPSPNARPEIATRVIDTTNGFLRKSTNRNALPVTQTYAENIRRGEFSDATSSDWSLFTSSDEASFTTESTRDSFSTVDYGDSGNMDPISSIFNYTPERSYMKFSHSRPVTRVISQKGHVEPVKRIDHSKRVNHSSSNEHPQNGNCGMYVHYGSNPVCGITRTSSSQ 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0419 992 Gene3D - 125 177 - -
Aed1g0419 992 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 80 617 - -
Aed1g0419 992 Gene3D Cysteine proteinases 621 782 - -
Aed1g0419 992 SUPERFAMILY HIT/MYND zinc finger-like 132 177 - -
Aed1g0419 992 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 80 617 - -
Aed1g0419 992 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 624 937 - -
Aed1g0419 992 SUPERFAMILY Cysteine proteinases 524 784 IPR038765 -
Aed1g0419 992 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 624 937 - -
Aed1g0419 992 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 528 543 IPR018200 GO:0004843|GO:0006511
Aed1g0419 992 MobiDBLite consensus disorder prediction 949 971 - -
Aed1g0419 992 MobiDBLite consensus disorder prediction 411 431 - -
Aed1g0419 992 ProSiteProfiles Zinc finger MYND-type profile. 136 173 IPR002893 -
Aed1g0419 992 Pfam MYND finger 136 173 IPR002893 -
Aed1g0419 992 Gene3D Cysteine proteinases 518 620 - -
Aed1g0419 992 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 527 802 IPR028889 -
Aed1g0419 992 MobiDBLite consensus disorder prediction 336 367 - -
Aed1g0419 992 Pfam Ubiquitin carboxyl-terminal hydrolase 528 760 IPR001394 GO:0004843|GO:0016579
Aed1g0419 992 MobiDBLite consensus disorder prediction 810 829 - -
Aed1g0419 992 MobiDBLite consensus disorder prediction 333 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0419 Aed-Chr1 5945064 5952355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0419 501 783 Miscellaneous Gene Families AT4G31670 43.155 1.61e-84 284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0419 1 5945064 5952355 Aed1g0419 1 5945064 5952355 ECH