Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0404 ATGGCTGCGGTTGCTGAGATTATTCCCGCTGATGCCAGCAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAATTTTTCCCTTCATCATATTCTCCAAATCATGATCATCGCCTTCAGGGCTTTAATCAGCTCTCACCAACCCACTTTCTGGTCAACTCTAAGGCCTCTGCTAATGAGAATTTCCAGAACAATCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCGTTAGAAGAACTGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGTCTGGCTGCCTTATTCAGCGGCTGCGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTCGAGTTTGCAGATGACTATGGTGCAAGGACTGCTCTTAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACATTCCTCCCTAGGGTTTCTCAAGCTGAAGTGAAGAACTTTTTTGAATCAGCTTGTGGCGAGGTTACGCGCCTGAGGCTCTTGGGGGACCATGTGCATTCAACTCGAATTGCTTTCGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGCAGTGGAATGCTCTTGGGGACCCAGCCTATAAGGGTAAGTCCTTCAAAGACTCCGGTGAGGCCAAGGGTGACTCGTCCAGCATCTCATTAA 834 0.4544 MAAVAEIIPADASKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHRLQGFNQLSPTHFLVNSKASANENFQNNRRRRNSFNQGRRRVSGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFSGCGQVIDCRICGDPHSVLRFAFVEFADDYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0404 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Aed1g0404 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 258 IPR000504 GO:0003723
Aed1g0404 277 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 276 - -
Aed1g0404 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Aed1g0404 277 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 276 - -
Aed1g0404 277 Gene3D - 70 188 IPR012677 -
Aed1g0404 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 265 IPR000504 GO:0003723
Aed1g0404 277 CDD RRM1_CID8_like 110 189 IPR034823 -
Aed1g0404 277 SUPERFAMILY RNA-binding domain, RBD 198 271 IPR035979 GO:0003676
Aed1g0404 277 Gene3D - 195 261 IPR012677 -
Aed1g0404 277 MobiDBLite consensus disorder prediction 76 103 - -
Aed1g0404 277 SMART rrm1_1 196 261 IPR000504 GO:0003723
Aed1g0404 277 SMART rrm1_1 113 183 IPR000504 GO:0003723
Aed1g0404 277 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
Aed1g0404 277 SUPERFAMILY RNA-binding domain, RBD 73 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0404 Aed-Chr1 5743889 5750862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0404 109 246 Eukaryotic Initiation Factors Gene Family AT1G34140 27.333 1.99e-09 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0404 1 5743889 5750862 Aed1g0404 1 5743889 5750862 ECH