Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0378 ATGTCTGATGCTATGCAGATGCTCCAGTTGGGTCAACTTCTCGAACCTTCGGCCCCACCTTCTTCTCTCTTCCCATCCCATCCTTTTAAATACACCAACGTTAATCTCTCAGTCTCACACAACACAACCATGGATGAACACGAACCCACATTGTTGTTCCCCGACACAGACCTCGATCTCAGCTTCACCAGCACCACCACCGACCGCACCACCAACACAACCACCAGCGCCAGAACCAGCTTAGCCCGCACCAGCAGCCTCACCCTCAGCTTCAACGACCGCCTCTCCACATTCTCCGCCGCGGAGAACATACCCACACCCGCTGCCGTCATCAACCGCCGTCCCCATCGCAGCTCCGACCCTAACTGGTCCGCCATCCAGGCCGCTGTGAACCTCTCTTCCGACGGCCGTCTCCACCTCCGCCACCTCAAGCTCCTCCGCCACGTCGGCTCCGGAAACCTCGGCCGCGTCTTCCTCTGCCGCCTCCGCGACTACGACGGCGCCTACTTCGCCCTCAAAGTCGTTGATAAAGACCTCCTCACCCCCAAAAAACTCTCCCACGCGCAGACCGAGGCAGATATCCTCCACGCGCTCGACCACCCCTTCCTCCCCACTCTCTACGCGCGCATCGACGTCTCCCACTACACGTGCCTCCTCATCGACTTCTGCCCCGGCGGCGACCTCCACTCCCTCCTCCGCAAACAGCCCAACCACCGCTTCCCCCTCGCCGCGGCGCGCTTCTTCGCCGCCGAGATCCTCCTCGCCCTCGAGTACCTCCACGCGCTCGGCATCGTCTACCGCGACCTCAAACCCGAAAACGTCCTGTTACGCGAAGACGGCCACGTCATGCTCTCAGATTTCGATCTATGCTTCAAGTCCGACGTGGAACCCACTCTCAACCTCCGGGCCCACACTCCACCCCACGTGGCCCCCACAAACGGTTGTTTCAGTTATAACCGTCATAAAAAAAAAGAAAAATCACTTGCAATTGCAACAGAGTTCGTGGCTGAACCGGTAACAGCGTTTTCACGGTCATGCGTCGGTACACACGAGTATCTCGCGCCGGAGCTTGTATCCGGTAACGGACACGGCAACGGCGTGGATTGGTGGGCTTTCGGGATTTTCATTTACGAATTATTGTACGGGACGACGCCGTTTAAGGGGTGCAACAAGGAGGGCACGCTGCGCAACATAGCGTCGAGTAGCAACGACGTGAGGTTCGCCCACGTGGCGGCGCGAGAGGAGCCTGGGATGGCTGAGGCTAAGGATTTGATTGAGAAATTGTTAGTGAAGGATCCTCGAAAGAGGCTAGGGTGCGCCAAGGGCGCTACTGAGATTAAACAACACGCGTTTTTCGATGGGATTAAATGGCCTTTGATTAGGAATTACCGGCCACCGGAAGTGAAAGGGTTGATGAGAAAGAACAACAAGTCGCACGTGAGTGGTCACGTGAGTTGCAAGAGAAAGAGGTGGTGCTGGTGGTGGAAGAGATTAGGGAATGTTGTGAAAGGGGGTAAATATAATTATTATTATCATTATGTTGATGATCATAGTTACAAGGTTAATTAG 1569 0.559 MSDAMQMLQLGQLLEPSAPPSSLFPSHPFKYTNVNLSVSHNTTMDEHEPTLLFPDTDLDLSFTSTTTDRTTNTTTSARTSLARTSSLTLSFNDRLSTFSAAENIPTPAAVINRRPHRSSDPNWSAIQAAVNLSSDGRLHLRHLKLLRHVGSGNLGRVFLCRLRDYDGAYFALKVVDKDLLTPKKLSHAQTEADILHALDHPFLPTLYARIDVSHYTCLLIDFCPGGDLHSLLRKQPNHRFPLAAARFFAAEILLALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVEPTLNLRAHTPPHVAPTNGCFSYNRHKKKEKSLAIATEFVAEPVTAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGIFIYELLYGTTPFKGCNKEGTLRNIASSSNDVRFAHVAAREEPGMAEAKDLIEKLLVKDPRKRLGCAKGATEIKQHAFFDGIKWPLIRNYRPPEVKGLMRKNNKSHVSGHVSCKRKRWCWWWKRLGNVVKGGKYNYYYHYVDDHSYKVN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0378 522 CDD STKc_phototropin_like 150 468 - -
Aed1g0378 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Aed1g0378 522 Pfam Protein kinase domain 145 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0378 522 SMART serkin_6 143 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0378 522 Gene3D Phosphorylase Kinase; domain 1 142 222 - -
Aed1g0378 522 Gene3D Transferase(Phosphotransferase) domain 1 344 470 - -
Aed1g0378 522 PANTHER FLIPPASE KINASE 1-RELATED 51 485 - -
Aed1g0378 522 SUPERFAMILY Protein kinase-like (PK-like) 119 467 IPR011009 -
Aed1g0378 522 Gene3D Transferase(Phosphotransferase) domain 1 223 311 - -
Aed1g0378 522 PANTHER TELOKIN/MYOSIN LIGHT CHAIN KINASE-RELATED 51 485 - -
Aed1g0378 522 ProSiteProfiles Protein kinase domain profile. 143 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0378 Aed-Chr1 5557430 5558998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0378 53 514 AGC Kinase Gene Family AT3G14370 64.375 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aed1g0378 Pkinase 1.6e-54 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0378 1 5557430 5558998 Aed1g0378 1 5557430 5558998 ECH