Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0377 ATGTTAATTTTGGTGGGGAACGTGCAAGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTTGGGAGCCTCATGGGTGTGAGTTCCTCTGGAAGGTCCCATTCTGTGGTGAAAAGAGTCTCTCTTTCAAGAGGGAACTGTAGAGGGAGAAAGAGATGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTGGTAGTAGTAGTAGTAGTAACGGTGGAGATGATGGTGCTGGTTTTCTGCTTAAGCCTCCTCTTAAGCCTGTGTTGAAGTCCCCAGAGAATAAGAGTGACCCCATTTTGGGGCCCTCAGGGACTACCGGGGATGTGGATGAGAGGAATAAGGTGATTGAATCGCTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTCGAGAGTTCTAAGGTGAATGGTGAAAGGAGTAATGGTTCGGTGAATAAACTGGTACGGAATAATAATGCAGATGGTAGTCCTAAGGCTGATAAACCGGTGAGTTCAGCATCATCACAAAAGTCTAAAACGTTGAAGAGTGTATGGCGTAAAGGGGACACGATTTCATCGGTGCAGAAGGTTGTGAAGGAAGTTCCCAAGCCTAATAATAATAACAAGAATGAAGGGGAGAGGTCTCAAACAAGGGGAGGGGAGAGGATGGTATCTCAAACTCGTGCTCCTCAACCGCCTTTGAAACCTCAACCGCCTTCGCAACCTCAACCGACATTGCTATCAAAACCTTCTATAGCTCCCCCACCTGTCAAGAAACCTGTTGTCTTGAGGGATAAGGGAGCAGCTGAAACATCAGTTACATCTAAAGAAAAGAAGTCGGGGCCCATCTTGATTGACAAGTTTGCTTCCAAGAAAGCAGTAGTTGATCCTCTAATTGCGCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGGACCTCCCCAAGGAAGGTTTAAAGACGATTTCCGGAAGAAAGGTGCTTCAGCTGGGGGACTAAGAAGACGAATTTTAGAGGATGATGGATTGATTGAGGATGCATCTGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGCAAGGAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAGGGCAGCACGACTCCAGGCTGCCAGGGATGCAGCTCCGGTCAAAGCAGAAATTCTAGAGGTCGGTGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGCGAAATCCTGGGTTTTTTGTACTCCAAGGGAATAAAACCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTGGAAGTCATAGATGCTGAATCAGTCAAAGTTGAAGGTTTAGCGAAGAAAAGGGCAATTCTTGACGAAGATGACCTTGACAAACTCAAAGATAGGCCCCCTGTTATTACTATTATGGGCCATGTAGATCATGGAAAGACAACTCTTTTGGATTTTATAAGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGAGCCTATGAAGTGGAAGTACCTGTTGATGGCAAAAAGTTGCCCTGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGTGGAACAAGAGTAACAGACATTGCTATTATTGTTGTGGCTGCCGATGATGGCATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCAATAAACAAGGCACGGCAACATGAAATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAAGAGCTTTCTTTAATTGGTTTAATGCCAGAAGACTGGGGTGGTGATGTCCCAATGGTTCCGATAAGTGCTCTTAAAGGGAAGAATATAGATGATCTTTTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGGGCAAAGGGAACAGTCATTGAGGCAGGGCTAGATAAATCAAAGGGACCATTTGCTTCATTTATTGTGCAGAATGGCACCCTTAAACGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATAGTGGAAAGCGGGTTGATGATGCTACACCCTCTATACCCATACAGGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAATCCCTTGATACTGCACGTGAAAGGGCAGAGACTTGTGCTGAGTCATTGCGTAATGAGCGTATTTCAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCGGCAGTTTCATCAGGAAAGCTGTCTGGACTAGACTTGCATCAACTAAATATTATTTTAAAGGTTGATCTTCAGGGATCTATTGAAGCTGTTAGAAAAGCTCTGGAGGTGCTACCACAAGACAATGTCACATTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAACACAAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGCAGAGAACAAAGCTGTTGAGATTAGATTATATAGAGTAATTTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCCTAGAATCGGTTGAGGAACAAGTAACAATTGGTTCAGCAGTAGTACGAGCTGTATTCAGCAGTGGTAGTGGTCGCGTGGCTGGATGCATGGTTACAGAGGGAAAGATACTAAAAGACTGTGGTATTCGAGTCAAGCGGAAGGGCAAAGTTGTTCATGTTGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACAGTTGAGAAGAGGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGCTCTTTCACAAACATCACTGAGCTCTCGGAGTTTGGCCATGGCGGATGAGCCTGTGTCTCGTGGTGACAGCCCCAGCATCGGAAGATCCATTTTGGGGTATTCTCTGACATCCCCAGATTTGGTGATTTGTGCTGGCTCACCAGACATCGCTGGAATCAGTTATGGTGATTCCCCTGAGTTGTTGAAGAACAAACATTGCAAGAATGTGGAGTCATCTATGGAGCTTTCTCTAGACTATGGAATCAAGGGGTCTCAAGTGGTGGAAGTTGACAATGGCCATAAGATCCCAACTGTTAAATTCTCAAACTTCTGTCAAACTTTTGAGCAAGAGGAAGAGCTGCTATCCCCTGAAGCCTCCTTTGAGCTTCTTCCACCCCTTGTAACCAACAATGAGTCACCCCAAGGTCTTCCTCATAGAGATACTGAGATGCTAGAAGATATTGGAGTGTCTCTGGAGGCAGAAATGGAGTTCTCAGATGCTGAGGATATTGGGGTGGAAGAGAAATTTAAGAGGCTGAAAAGAGACTTTGAGTGTCAGAGAAAGGAGCTTGCAGAAACAAGGAGAGAGATGGGGGAGATCAAGAGGGAGAATCAACAGAAGAGTAGAGAATGCCAAGAAGCTTGGAAGTCCTTGAAAGATCTTCAGAATGAGCTAATGCGCAAGTCCATGCACGTAGGATCTTTGGCATTTGCCATTGAGGGGCAAGTGAAGGAGAAAAGTAAGTGGTTTTCATCACTGAGAGACTTGACGAGGAAACTGAAGATTATGAAAATGGAACACATCCAGCTATTAGAGGAAGCAGAAGCAAGCAAAAAATATCAAGCAGATATGAGAGAAATGGGGCTTACTATCAAGTCCAAAAGAAACATAAGGGTCTTTTGCCGTTGTAGGCCTCTCAATGCCGAAGAGACAACTGCAGGAGCATCAATGGCCTTAGATTTTGAATCTGCTAAAGATGGTGAGCTAACTGTAATGTCAAATGGAACTCCTAAAAAGACTTTCAAGTTCGATGCTGTCTTTGGTCCCCAAGCTGAGCAAGCTGATATTTTTGAAGACACGGGACCATTTGCAACCTCAGTTCTAGATGGATTCAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTTCACAATGGAAGGCACAGAAGAGGCTCGAGGGGTTAATTTCAGGACTCTTGAGAAAATGTTTGACATAATCAAGGAAAGGCAGGAGCTCTATTGTTATGATATCTCTGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTGCAGGAAATCATCCTGGAACAGCAGCAAAAAGACTTGAAATAAGGCAAGCTGGTGAAGGAATGCATCACATTCCTGGGTTGGTTGAGGCACATGTGAACAATATGACTGAAGTCTGGGAAGTCCTACAAACCGCAGGCAGCGAGCGAGTGGCAAAGACAGAAGTGCATGGTGATAGACTGAAGGAGACGCAAAATATTAATAGGTCTCTCTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACAAAAAGTTCACACATCCCTTTCAGGAACTCCAAGCTTACACACTTGCTGCAAGACTCATTAGGAGGAGATTCAAAGGCACTCATGTTTGTACAGATCAGTCCTAATGAAAACGATTTGAATGAGACAATTTGCTCTCTGAACTTTGCTAGTAGAGTAAGAGGAATAGAATTGGGACCTGCAAGAAAGCAGTTGGACACTGTTGAACTTTTGAGGCACAAACAAATGGCTGAGAAAGTCAAACAAGAGGTAAGGCTGAAGGATTTGCAAATCAAGAAGATGGAGGAAACAGTCCATGGATTAGAGTCCAAGATGAAGGAAAGAGATAGTAAGAACAAAAATCTGCAAGAGAAGGTCAAGGAACTGGAATCACAACTTCTGGTCGAGAGAAAGCTGGCACGTCAACACGTAGACTCAAAGATAGCTGAGCAGCACCAAATGATACATCAAGAAGAGCAAAACAATACACTTATGAGACCAGCACTTGCAAATAGACCACTAGTAAGCCTCAAGAATTTTAATGATTCAGTGAGTGGTGGATGGTTCAAAGATCATCAACAAACAAATTCAGCTAAACAACCGCTCACCGAGAGCAACATCTTGAAGCCTTGTATTCCCTTTTCTACAATGGAGAGCTCCATCAAGTGCATTGATCATGCTGAGAAAGAAAACAATCCTGACATGGCGGCTGACAAAGCCGCCCTACTGCAAAAAAGGCTTGCAAGAGCTTCTTCTATCTGCATGACGATGACACCACGTGTTCCTTCGGCCATTGCCTCAAGGAGAAACTCTCTGATTCCACTCCCAAGTATACATAGCTTAACACAGTTCCAAACACCATTATTACCAAAGTTAACAAGCCAAGTTGATGAGAAGGATGAATCAGAAACCAACTGTGTTCCTGTACAGACTCATTGTGAGAGTCCTCCCAGAGAGGTTAAAAGTGGTGCTAAGAGGATTGGTAGCATACTAAGAAGAAGCCTTCATAAGAAGATACATGTGAAGTCTCCACTTCAGCAGCACATGAGGAAGGTTGGTGTAAATGTAGGAATGGAGAAAGTTAGAGTTTCCATTGGAAGTAGGGGAAGATTAGCACCAAGGGGGCAAGTAGGATCTGCTAGAAGAGGAGGAGGAGCTAAAGATGTTCAACAAAAGAATAGTCATAAGGAAAAGGAAAGAGGATGGATCTGA 5703 0.4401 MLILVGNVQGTMSSLASPVSFGSLMGVSSSGRSHSVVKRVSLSRGNCRGRKRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSGSSSSSNGGDDGAGFLLKPPLKPVLKSPENKSDPILGPSGTTGDVDERNKVIESLGEVLEKAEKLESSKVNGERSNGSVNKLVRNNNADGSPKADKPVSSASSQKSKTLKSVWRKGDTISSVQKVVKEVPKPNNNNKNEGERSQTRGGERMVSQTRAPQPPLKPQPPSQPQPTLLSKPSIAPPPVKKPVVLRDKGAAETSVTSKEKKSGPILIDKFASKKAVVDPLIAQAVLAPPKPGKGPPQGRFKDDFRKKGASAGGLRRRILEDDGLIEDASELNVSIPGAATARKGRKWSKASRRAARLQAARDAAPVKAEILEVGDKGMLVEELAYCLATSEGEILGFLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDAESVKVEGLAKKRAILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDFIRKSKVAASEAGGITQGIGAYEVEVPVDGKKLPCVFLDTPGHEAFGAMRARGTRVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKARQHEIDKDGANPERVMQELSLIGLMPEDWGGDVPMVPISALKGKNIDDLLETVMLVAELQELKANPDRRAKGTVIEAGLDKSKGPFASFIVQNGTLKRGDIVVCGEAFGKVRALFDDSGKRVDDATPSIPIQVIGLNNVPIAGDEFEVVESLDTARERAETCAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALEVLPQDNVTLKFLLEATGDVNTSDVDLAVASKAIILGFNVKAPGSVKSYAENKAVEIRLYRVIYELIDDVRNAMEGLLESVEEQVTIGSAVVRAVFSSGSGRVAGCMVTEGKILKDCGIRVKRKGKVVHVEDFDDWEEGDILEAFNTVEKRRTLEEASASMAAAVEGVGALSQTSLSSRSLAMADEPVSRGDSPSIGRSILGYSLTSPDLVICAGSPDIAGISYGDSPELLKNKHCKNVESSMELSLDYGIKGSQVVEVDNGHKIPTVKFSNFCQTFEQEEELLSPEASFELLPPLVTNNESPQGLPHRDTEMLEDIGVSLEAEMEFSDAEDIGVEEKFKRLKRDFECQRKELAETRREMGEIKRENQQKSRECQEAWKSLKDLQNELMRKSMHVGSLAFAIEGQVKEKSKWFSSLRDLTRKLKIMKMEHIQLLEEAEASKKYQADMREMGLTIKSKRNIRVFCRCRPLNAEETTAGASMALDFESAKDGELTVMSNGTPKKTFKFDAVFGPQAEQADIFEDTGPFATSVLDGFNVCIFAYGQTGTGKTFTMEGTEEARGVNFRTLEKMFDIIKERQELYCYDISVSVLEVYNEQIRDLLVAGNHPGTAAKRLEIRQAGEGMHHIPGLVEAHVNNMTEVWEVLQTAGSERVAKTEVHGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLNETICSLNFASRVRGIELGPARKQLDTVELLRHKQMAEKVKQEVRLKDLQIKKMEETVHGLESKMKERDSKNKNLQEKVKELESQLLVERKLARQHVDSKIAEQHQMIHQEEQNNTLMRPALANRPLVSLKNFNDSVSGGWFKDHQQTNSAKQPLTESNILKPCIPFSTMESSIKCIDHAEKENNPDMAADKAALLQKRLARASSICMTMTPRVPSAIASRRNSLIPLPSIHSLTQFQTPLLPKLTSQVDEKDESETNCVPVQTHCESPPREVKSGAKRIGSILRRSLHKKIHVKSPLQQHMRKVGVNVGMEKVRVSIGSRGRLAPRGQVGSARRGGGAKDVQQKNSHKEKERGWI 1900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0377 1900 CDD IF2_eIF5B 489 660 - -
Aed1g0377 1900 Coils Coil 1161 1195 - -
Aed1g0377 1900 TIGRFAM IF-2: translation initiation factor IF-2 408 952 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Aed1g0377 1900 MobiDBLite consensus disorder prediction 74 133 - -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 212 237 - -
Aed1g0377 1900 CDD IF2_mtIF2_II 670 761 IPR044145 -
Aed1g0377 1900 ProSiteProfiles Kinesin motor domain profile. 1281 1560 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed1g0377 1900 Gene3D Kinesin motor domain 1468 1603 IPR036961 -
Aed1g0377 1900 SMART kinesin_4 1279 1568 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed1g0377 1900 Pfam Kinesin motor domain 1468 1560 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed1g0377 1900 Pfam Kinesin motor domain 1287 1467 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed1g0377 1900 Pfam Elongation factor Tu GTP binding domain 491 656 IPR000795 GO:0003924|GO:0005525
Aed1g0377 1900 Gene3D Translation factors 904 954 - -
Aed1g0377 1900 Pfam Translation-initiation factor 2 799 892 IPR023115 -
Aed1g0377 1900 SUPERFAMILY Translation proteins 906 974 IPR009000 -
Aed1g0377 1900 Coils Coil 1238 1258 - -
Aed1g0377 1900 Gene3D - 483 666 IPR027417 -
Aed1g0377 1900 Gene3D - 799 903 IPR036925 -
Aed1g0377 1900 PRINTS Kinesin heavy chain signature 1461 1479 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed1g0377 1900 PRINTS Kinesin heavy chain signature 1355 1376 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed1g0377 1900 PRINTS Kinesin heavy chain signature 1510 1531 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed1g0377 1900 TIGRFAM small_GTP: small GTP-binding protein domain 488 654 IPR005225 GO:0005525
Aed1g0377 1900 MobiDBLite consensus disorder prediction 1885 1900 - -
Aed1g0377 1900 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 798 910 IPR036925 -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 244 270 - -
Aed1g0377 1900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1281 1598 IPR027417 -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 1800 1820 - -
Aed1g0377 1900 SUPERFAMILY Translation proteins 667 751 IPR009000 -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 1862 1900 - -
Aed1g0377 1900 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 486 664 IPR000795 GO:0003924|GO:0005525
Aed1g0377 1900 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 952 984 IPR015760 -
Aed1g0377 1900 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 952 IPR015760 -
Aed1g0377 1900 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 952 984 - -
Aed1g0377 1900 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 952 - -
Aed1g0377 1900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 668 IPR027417 -
Aed1g0377 1900 Gene3D Translation factors 667 783 - -
Aed1g0377 1900 Gene3D Kinesin motor domain 1220 1467 IPR036961 -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 317 339 - -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 74 95 - -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 156 203 - -
Aed1g0377 1900 Coils Coil 1581 1636 - -
Aed1g0377 1900 Hamap Translation initiation factor IF-2 [infB]. 7 974 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Aed1g0377 1900 Coils Coil 750 770 - -
Aed1g0377 1900 MobiDBLite consensus disorder prediction 149 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0377 Aed-Chr1 5535526 5551680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0377 1247 1587 Calmodulin-binding Proteins AT5G65930 35.969 9.99e-58 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0377 1 5535526 5551680 Aed1g0377 1 5535526 5551680 ECH