Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0359 ATGGCTTCGCTTCTGAACACGGTGTCACCAGCCGCGAATTTATCCTCCAAAACAAAACGACCCACTTGTGGTGGCGGTTTTCTGCACTCCCAGATTCCAAATCTCCGCACTTTTTCCCTCAAAAAGGGTTTTTCTAGGGTTTCTGCTTCGACCCAGATTGCCATTTCCCCAAAAGATTCCGTTTTTAATCTCCCCAATTGGAGGGTTGGGAGGAATGACCAAAGGGGCAAAGAGCTGAGGATATATGATGCATTTCTGCATTTGGAGTATTTGGTGGGTAAGGGCCAAAAGCCTGAGGTAATTCAAGCAACTCAGCTTTTGTATGATCTTTGCAAATTCAACAAAGCTAGAAAAGCTGTTAGGGTGATGGAGATGATGGTTGGTTCAGGTATTATACCTGATGCAGCCTCTTACACACACTTGGTCAATTTTCTGTGCAAGAGGGGCAATGTTGGGTATGCAATTCAGTTGGTGGAGAAGATGGAAGGGCATGGCTTTCCAACTAACACTGTTACCTATAACACTCTAGTTAAAGGGCTTTGCATGCATGGGAATTTGAATCAGAGCTTGCAGCTTTTGGATAGGTTGACAAAGAAAGGGCTGGTCCCGAACGCATTCACATATTCGTTCCTTCTCGAAGCGGCGTATAAGGAGAGGGGAGTGGATGAGGCAATGAAGCTTCTGGATGATATAATTGCCAAGGGTGGGGTGCCTAATTTGGTTAGTTACAATGTGTTGTTGACCGGGTTGTGCAAGGAAGGGAGAACTGAAGAAGCTATTAAGCTTTTCCGGGAATTGCCTGCTAAAGGGTTCAGTCCTAGTGTTGTGAGTTTCAACATTTTGCTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAGGCGAATGAGCTTCTGGCAGAGATGGATAAAGCAGACCAGCCTCCCTCGGTGGTCACTTACAACATACTGATTACTTCGCTTTCACTCCAGGGAAGAACAGAACAAGCTTTCAAGGTTTTGGATGAAATGATGAGGAGTGGGTTCAAGGCAAGTGCCACTAGCTACAATCCTATCGTTGCCCGCCTATGCAAGGAAGGGAAGGTGGATCTTGTTTTCCAGTGTCTAGACCAAATGATTCACCGGCGCTGTCATCCCAACGAAGGAACTTACAGTGCTATCGCGATGCTGTGCGAGGAAGGCAAGGTGCAGGAGGGTTTCTTTATAATCCAAAGCTTGGGTAATAAACAAAACATCCCGATGCATGATTTTTACAAGAATGTAATTGCAAGCTTGTGTAGGAAAGGGAACACATATCCAGCCTTTCAGATGTTATATGAAATGACAAAGTATGGATTCACACCGGATTCTTACACTTACTCATCTTTGATAAGAGGAATGTGTAGGGAGGGGATGCTGGACGAGGCTCTTAAGATTTTCCGGATTTTGGAAGAAAACGACCACATGCCCGATATCGATAACTACAACGCACTTATACTCGGATTTTGCAAAGCTCAAAGAACAGACTTGTCAATAGAGATATTCCTGATGATGGTTAACAAAGGATGTGTGCCTAATGAGAATACCTACACCATTCTTGTGGAAGGGCTTGCTTTTGAAGATGAGACAGGTATAGCAGCTGATCTGATTAAAGAGTTGTATATGAAAGGGGTTTTGAGCCAAAGTACTGTTGAAAGACTTTGTATGCAATATGACCTCAAGGAATTAATAGCAACAGTGTAG 1719 0.4439 MASLLNTVSPAANLSSKTKRPTCGGGFLHSQIPNLRTFSLKKGFSRVSASTQIAISPKDSVFNLPNWRVGRNDQRGKELRIYDAFLHLEYLVGKGQKPEVIQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGVPNLVSYNVLLTGLCKEGRTEEAIKLFRELPAKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKADQPPSVVTYNILITSLSLQGRTEQAFKVLDEMMRSGFKASATSYNPIVARLCKEGKVDLVFQCLDQMIHRRCHPNEGTYSAIAMLCEEGKVQEGFFIIQSLGNKQNIPMHDFYKNVIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHMPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEDETGIAADLIKELYMKGVLSQSTVERLCMQYDLKELIATV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0359 572 Gene3D Tetratricopeptide repeat domain 307 373 IPR011990 GO:0005515
Aed1g0359 572 Gene3D Tetratricopeptide repeat domain 195 306 IPR011990 GO:0005515
Aed1g0359 572 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 568 - -
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 171 205 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 450 483 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 137 167 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Aed1g0359 572 TIGRFAM PPR: pentatricopeptide repeat domain 487 519 IPR002885 -
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Aed1g0359 572 Pfam PPR repeat 444 473 IPR002885 -
Aed1g0359 572 Pfam PPR repeat 130 162 IPR002885 -
Aed1g0359 572 SUPERFAMILY TPR-like 146 399 IPR011990 GO:0005515
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Aed1g0359 572 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 568 - -
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Aed1g0359 572 Gene3D Tetratricopeptide repeat domain 44 194 IPR011990 GO:0005515
Aed1g0359 572 Gene3D Tetratricopeptide repeat domain 385 567 IPR011990 GO:0005515
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Aed1g0359 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Aed1g0359 572 Pfam PPR repeat family 238 286 IPR002885 -
Aed1g0359 572 Pfam PPR repeat family 308 349 IPR002885 -
Aed1g0359 572 Pfam PPR repeat family 482 530 IPR002885 -
Aed1g0359 572 Pfam PPR repeat family 169 214 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0359 430 556 Glycosyltransferase AT1G05670 22.835 4.74e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0359 1 5347428 5349146 Aed1g0359 1 5347428 5349146 ECH