Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0345 ATGGCCGTCGAGGCGCGCCATCTCAATCTCTTCCCTTCTCAACTCATCGCCAACAGGGAAGTGATGAATTCTATTGAGGCGAATATGAACATGTACACCCACCACCACAACACCAACAACAACACTCCGATGAGTTACTCTTCATTTCTGCCGTTTTCTGCTGCCGTCAGGGAGACGGTGCTTCCCTCCTCTGTTTACAATTCCCTCGGTAACGCCGTGAAATCTGAAAGTGGTGTTACCTATAACAACAACAATCACAACAACAACGTTGTTTCTCCCTTGTCGAGAAAGCGTTCCCGAGACAACAACGGTTACAACACCAACAACGATAACTCGTTTTCATTTCTCGGTCAAGACGTTTCTCTCCAGATCCAACAACAGCAGCTTGACATTGAACATTTAATCATGCAACGCATGGAGAAAGTGAGAATGGAGATTGATGAGAAGCGAAAGAGGCAAGCGAGGAGGATTATCGAAGCTATCGAGGTTGGAGTGATGAAGAAGCTGAAATCGAAAGAGGAAGAGATAGAAAAAATTGGAAAGCTGAATTGGGCGTTGGAGGAGAAAGTGAAAACACTCTGCATGGAGAATCAGATATGGCGCGACTTGGCGCAAACCAACGAAGCCACCGCGAATGCTCTGCGCTGCAATCTGGAACAAGTTTTGGCTCAGCGTGGTGTAATGACAGCGGAGGAAGATGGCGCCGCCACCGTGCTGCGGGAGATGGATGATGCAGAGTCATGCTGCGGGAGCACCGAGGAGGAGGAAGAGAAAGAGGTGGTTGGCTGGCGCAAGTTAGCTGGAGGGGACGCAGGGGTGAAGGATAAGGAGGATGGTGCAGAGAGTAGGGGCAATAATGGTAATAATAGTAATGGGAGGTTGTGCAGGAACTGCGGGAAGGAAGAGTCGTGCGTGCTGATTTTGCCGTGCCGGCATCTGTGCCTGTGTACTGTGTGTGGGTCTTCACTCCACATTTGTCCTATCTGTAAATCCTTCAAGACTGCTAGTGTCCATGTTAACATGTCCTAA 1029 0.4917 MAVEARHLNLFPSQLIANREVMNSIEANMNMYTHHHNTNNNTPMSYSSFLPFSAAVRETVLPSSVYNSLGNAVKSESGVTYNNNNHNNNVVSPLSRKRSRDNNGYNTNNDNSFSFLGQDVSLQIQQQQLDIEHLIMQRMEKVRMEIDEKRKRQARRIIEAIEVGVMKKLKSKEEEIEKIGKLNWALEEKVKTLCMENQIWRDLAQTNEATANALRCNLEQVLAQRGVMTAEEDGAATVLREMDDAESCCGSTEEEEEKEVVGWRKLAGGDAGVKDKEDGAESRGNNGNNSNGRLCRNCGKEESCVLILPCRHLCLCTVCGSSLHICPICKSFKTASVHVNMS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0345 342 PIRSF SBP1_RNase_bind 1 342 IPR017066 -
Aed1g0345 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Aed1g0345 342 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 341 - -
Aed1g0345 342 MobiDBLite consensus disorder prediction 76 105 - -
Aed1g0345 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 341 IPR013083 -
Aed1g0345 342 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 341 IPR017066 -
Aed1g0345 342 Coils Coil 169 189 - -
Aed1g0345 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0345 Aed-Chr1 5223032 5224724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0345 273 331 Miscellaneous Gene Families AT4G39050 33.898 8.10e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0345 1 5223032 5224724 Aed1g0345 1 5223032 5224724 ECH