Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0277 ATGGAGCCATCGCAACTCTTACATGACCCAGCTTTCCCTCTCTTCAAAATCCCTCGCAAAACCTCCCTCGAACCCCTCTCACCAGCCGCAACCGCCATAACCACCGCAAACCCCACCTCTCGCGGCGAAGACCCCGAAGAAACCGCCGAGACGTTCGGCGACCTCGGGCTCGGTGAATGGGCGGCAAAGACGTGCCGGGAACTCGGGATGCGGCGGCCGCGTCCCGTGCAGAGCCGGTGCATCCCGCGCGTGCTGGAGGGCCGCCACGTGCTGGGCATCGACGAGACCGGGAGCGGGAAGACGGCCGCCTTCGCGCTCCCGATCCTGCAGCGCCTCGCCGAGCACCCGTTCGGCGTGTTCGCGCTCGTTGTGACGCCCACGCGCGAGCTCGCGTTCCAGCTCGCGGAGCAGTTCCGCGCACTCGGCTCCGCCGTGAACCTCCGCATCGCGGTGGTCGTCGGCGGGATGGACATGCTGAAGCAGTCCAAGGAGCTGGCCGCGAGGCCCCACCTCGTCGTCGCCACCCCCGGGAGGATCCACGCCTTGCTCCGCAATAGCCCTGATATTCCTCCCGTTTTCTCCAGAACCAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGAGGAATTGAGATTTATATTTCAGTGCTTACCAGAAAATCGACAAAACCTGTTCTTTTCTGCAACAACTACAAGTAATCTGCAAAAGTTGCGTGAACGTTACCAAGATAAGATGTATGTCTATGAGGCATATGAAGGCTTTAAAACAGTTAAAACACTTAAGCAACAGGCTATATTCATCCCTAGAATGGTGAAGGATGTGTATTTGATGCATATTTTGTCTAAACTGGAAGATATGGGAATTCGGTCTGCTATTGTATTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTCGACGTGCTTGATCAAGAAGCAGCAGCTCTATATTCATTCAAATCACAAGCTGATAGGCTTGAAGCACTTCATCAATTTAAATCGGGAAAGGTTCCTATACTTCTTGCAACTGATGTTGCCAGCCGCGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCGCGAGATTATATTCATCGTGTAGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTTATTCACGAAATCGAAGCTCTTATTGGGAAGCAACTTGAAATGATTGAATACAAAGAAAATGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCCAAGAATGTGGCAGAAATGAGGATAATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAGATAAAAATGCTAGAAGAGAAAGGATTGTTAATGAAAAGTAGTAAAAAGAGAAAACGAAATAAAGAATTTGCAGAGGAAGGGAATGAACAAAAAAAAGAGGTTTTCAGTGCTAAGAAAGTGGTGGAAATGAAGACAGTGGATGAGGATGGCATTGAGGAGAAAGCAGAAGAGGGGAGAAAACAAAAACTGAAAATGCGAACAGAGAAAGGTTTGCTAAAGAAAAAAAAGTCAAAAGAAAGAAATAAAGAATTCGCAAAGGAAGGGAAAAAACAGAAAAAGGAGAAAGTTGAAGCATTAGCAGATATAGCAACTCCAAAGAAAAGGAGTAAGAAGAGACTGTAA 1725 0.4783 MEPSQLLHDPAFPLFKIPRKTSLEPLSPAATAITTANPTSRGEDPEETAETFGDLGLGEWAAKTCRELGMRRPRPVQSRCIPRVLEGRHVLGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVNLRIAVVVGGMDMLKQSKELAARPHLVVATPGRIHALLRNSPDIPPVFSRTKFLVLDEADRVLDVGFQEELRFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKMYVYEAYEGFKTVKTLKQQAIFIPRMVKDVYLMHILSKLEDMGIRSAIVFISTCRDCHRLSLMLDVLDQEAAALYSFKSQADRLEALHQFKSGKVPILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIEALIGKQLEMIEYKENEALSLMKKVFSAKNVAEMRIIDDGFEEKAKERKKQKIKMLEEKGLLMKSSKKRKRNKEFAEEGNEQKKEVFSAKKVVEMKTVDEDGIEEKAEEGRKQKLKMRTEKGLLKKKKSKERNKEFAKEGKKQKKEKVEALADIATPKKRSKKRL 574
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0277 574 SMART ultradead3 69 269 IPR014001 -
Aed1g0277 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 428 IPR001650 -
Aed1g0277 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 50 78 IPR014014 GO:0003724
Aed1g0277 574 Coils Coil 536 556 - -
Aed1g0277 574 Pfam DEAD/DEAH box helicase 75 243 IPR011545 GO:0003676|GO:0005524
Aed1g0277 574 SMART helicmild6 308 389 IPR001650 -
Aed1g0277 574 Gene3D - 28 254 IPR027417 -
Aed1g0277 574 MobiDBLite consensus disorder prediction 509 574 - -
Aed1g0277 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 254 IPR014001 -
Aed1g0277 574 CDD SF2_C_DEAD 266 398 - -
Aed1g0277 574 Gene3D - 261 434 IPR027417 -
Aed1g0277 574 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 48 482 - -
Aed1g0277 574 PANTHER RNA HELICASE 48 482 - -
Aed1g0277 574 MobiDBLite consensus disorder prediction 533 567 - -
Aed1g0277 574 Pfam Helicase conserved C-terminal domain 292 389 IPR001650 -
Aed1g0277 574 CDD DEADc_DDX49 52 255 - -
Aed1g0277 574 MobiDBLite consensus disorder prediction 509 526 - -
Aed1g0277 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 408 IPR027417 -
Aed1g0277 574 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 200 208 IPR000629 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed1g0277 Aed-Chr1 4532713 4537371 Transposed
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0277 1 4532713 4537371 Aed1g0277 1 4532713 4537371 ECH